Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0178
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    27   7.2  

>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 71  LSVLHIPSFNYIKLVRICKYV 133
           L +L IPS N++K+  ICK +
Sbjct: 707 LGILSIPSSNFVKICVICKQI 727


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,058,147
Number of Sequences: 28952
Number of extensions: 194060
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)