Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0176
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   6.5  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   6.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.6  

>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 415 FFKVSAFFYWSQDWY--LIRIRISIFFLPTSR 326
           FF  + FF+W Q  Y  +  I+I  FFL  +R
Sbjct: 9   FFVDNYFFFWKQSKYQSIYAIQIRCFFLTVNR 40


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 736 MIHLLKRHKQISGIIINYAINCNRF 662
           ++HLLK+H  +  II++  +N  +F
Sbjct: 774 VLHLLKQHPHLKIIIMSATLNAEKF 798


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 443 IFLFMKSLCIFQSVCIFLLVTRLVPNKDKDK 351
           +  F  SLC+F S+ + L+   ++P+   D+
Sbjct: 39  LLTFFVSLCVFLSIILPLIFLVIIPHAQSDR 69


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 54  HYNCLKYRQNFWYL 13
           H N ++Y ++FWYL
Sbjct: 442 HKNLIRYNESFWYL 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,967
Number of Sequences: 5004
Number of extensions: 46582
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)