Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0176
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = -2

Query: 542 GVIINAENLAVSCRDCEDVCD*L*MMNNNPKFKIFLFMKSLCIFQ--SVCIFLLVTRLVP 369
           GV   + NL +  RD E +         NP F     +   C+    S  +F +V  LV 
Sbjct: 18  GVGFGSSNLQLIRRDAEGLDSERLTTRQNPDFASSTTLADFCLISRSSHAVFSVVFPLVA 77

Query: 368 NKDKDKYFFFAYLTLESVL 312
            +  D+Y   A L + SVL
Sbjct: 78  TEITDRYMGDAILDVNSVL 96


>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 421 CAFFKVSAFFYWSQDWYLIRIRISIFFLPTS 329
           CAF     F Y+ +DW ++ I +++  +P S
Sbjct: 204 CAFMATPLFAYFIRDWRILTIAVTVTGVPFS 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,826
Number of Sequences: 59808
Number of extensions: 281660
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)