Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0176
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.10 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 599 M*FNKFKI-VVVFYALFSFNVNKSIT-INGIVNNDTRYLLMSF 721
           M F+KF I ++VF  L  +N+NKSI+ I  +V+ +T  +  SF
Sbjct: 195 MLFSKFLIQLLVFVVLIRWNMNKSISEIKSMVSKNTFRMHKSF 237


>AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical
           protein C30E1.8 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 256 KMNIRKPYSKKVRELEETLDLLE-VHVLISN*FEN 155
           ++N   PYS+ V  + E  +LLE + V + N +EN
Sbjct: 14  ELNAEPPYSRYVAAVMEDYELLEQIRVFVGNEYEN 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,951
Number of Sequences: 27780
Number of extensions: 250329
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)