Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0176
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24600.3 68415.m02939 ankyrin repeat family protein contains ...    33   0.20 
At5g50140.1 68418.m06210 ankyrin repeat family protein contains ...    31   1.1  
At5g54700.1 68418.m06812 ankyrin repeat family protein contains ...    29   4.3  
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ...    28   7.5  
At1g10340.2 68414.m01165 ankyrin repeat family protein contains ...    27   9.9  
At1g10340.1 68414.m01164 ankyrin repeat family protein contains ...    27   9.9  

>At2g24600.3 68415.m02939 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 601

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 470 MMNNNPKFKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           ++ N   FK+F    ++ +F S+CI +L+  ++P + K
Sbjct: 441 LVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRK 478


>At5g50140.1 68418.m06210 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 535

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 449 FKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           FK+F    S+ +F S+CI +L+  ++P + K
Sbjct: 407 FKVFSVSNSIALFTSLCIVILLLSIIPFRTK 437


>At5g54700.1 68418.m06812 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 480

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 449 FKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           FKIF    S+ +F S+ I +L+  ++P K K
Sbjct: 258 FKIFYVSNSIALFTSLWIVILLVSIIPFKPK 288


>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 573

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -2

Query: 449 FKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           F++F    ++ +F S+CI +L+  ++P + +
Sbjct: 439 FQVFSISNNIALFTSLCIVILLVSIIPYRTR 469


>At1g10340.2 68414.m01165 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 574

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 470 MMNNNPKFKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           ++     FK+F    ++ +F S+ I +L+  ++P K K
Sbjct: 437 LVGKTTAFKVFAICNNIALFTSLGIVILLVSIIPYKRK 474


>At1g10340.1 68414.m01164 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 470 MMNNNPKFKIFLFMKSLCIFQSVCIFLLVTRLVPNKDK 357
           ++     FK+F    ++ +F S+ I +L+  ++P K K
Sbjct: 441 LVGKTTAFKVFAICNNIALFTSLGIVILLVSIIPYKRK 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,190
Number of Sequences: 28952
Number of extensions: 206790
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)