Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0175
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 81 1e-16
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 32 0.043
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 1.6
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 1.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 4.9
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 4.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.5
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 25 6.5
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 6.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.6
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 80.6 bits (190), Expect = 1e-16
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = +1
Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLT 435
+P+PPSATS+PA L Q+EWD++ L F R+ L +QELS ALY DAA RVI+RLT
Sbjct: 60 RPRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLT 119
Query: 436 KEVTAARE 459
KE ARE
Sbjct: 120 KERDEARE 127
Score = 48.4 bits (110), Expect = 6e-07
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +2
Query: 80 LYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTP 247
++C+IS S SG V+E+R+IE+ I E DP+ +E +EDL+ +K P
Sbjct: 1 MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVP 56
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 32.3 bits (70), Expect = 0.043
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +2
Query: 143 VFERRIIEKYIIENGVDPINGKELRVEDLIEIK 241
+F+ R I ++ ++G +PING++ + DLI++K
Sbjct: 67 IFDFRFIVPWLRKHGTNPINGQKASMSDLIKLK 99
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 223 GPY*DQNTTYRKPKPPSATS 282
GPY DQ + Y +PK PS+ +
Sbjct: 504 GPYVDQKSQYLQPKQPSSNT 523
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 268 PSATSIPATLKSMQDEWDALMLHAFTQ 348
PS+ P TLKS+Q + D H F++
Sbjct: 52 PSSNGRPTTLKSIQSKIDEFQYHDFSE 78
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 140 AVFERRII--EKYIIENGVDPINGKELRVEDLI 232
A F+RR E+ ++N +PING+E DLI
Sbjct: 857 AEFKRRKADAERLAVQNSNNPINGQETSEYDLI 889
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.9
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 188 VDPINGKELRVEDLIEIKTPPIESQNLQVPHQSLPH*KACKMSGTP*CYMPS 343
+D IN E DL TPP+E + P + P S +P C PS
Sbjct: 626 IDLINEFENLFADLERPSTPPVEIERALTPITTSPQKLKLPRSSSP-CKNPS 676
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 78 LSIVRY--QMKFPKYQWYHLRQELCLKG 155
+S+V Y Q+ FPK W H+ L L G
Sbjct: 664 VSVVVYLLQISFPKSSWKHVNPALLLGG 691
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 72 KCLSIVRYQMK-FPKYQWYHLRQELCLKGESLR 167
K LSI R + F K++W L ++L G SLR
Sbjct: 338 KTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLR 370
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 93 YQMKF-PKYQWYHLRQELCLKGESLRS 170
+ MK+ PK++W+HL +++ + + S
Sbjct: 213 WNMKYLPKFKWHHLTEQIAAENAARES 239
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 20 ILRLRAEFSNLYSDIISKMSLYCAISNXXXXXXXXSPTSGAV 145
IL + AEFSN+ +D+ K S+ I S GAV
Sbjct: 870 ILGILAEFSNILNDLKGKTSINEKIKTIVGIEKMLSLCGGAV 911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,178
Number of Sequences: 5004
Number of extensions: 41280
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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