Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0175
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893...    93   1e-19
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    31   0.40 
01_04_0091 - 15948192-15948905                                         27   6.5  
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468...    27   8.7  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    27   8.7  
04_04_0887 + 29095087-29096166                                         27   8.7  

>10_08_0316 -
           16688911-16689044,16689141-16689211,16689303-16689354,
           16689589-16689685,16689764-16689841,16689938-16690054,
           16690172-16690276,16691026-16691100,16691297-16691356,
           16691454-16691549,16691838-16691954,16692142-16692260,
           16692349-16692490,16694204-16694290,16694852-16694914,
           16695081-16695161
          Length = 497

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
 Frame = +1

Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLT 435
           KP+   A SIP  L   Q+EWDA+ML +F   QQL TARQELSHALYQHDAACRVIARL 
Sbjct: 30  KPRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLK 89

Query: 436 KEVTAAR----EGPRHTETAAGIAAPQA 507
           KE   AR    +  R    +   AAP A
Sbjct: 90  KERDEARALLAQAERQIPASMAGAAPTA 117


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
 Frame = +2

Query: 71  KMSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPP 250
           ++  YC                G+VF+   I  YI + G  P+ G  L+ EDL+ +    
Sbjct: 36  RLPFYCCALTFLPFEDPVCTADGSVFDLMSIIPYIKKFGKHPVTGTPLKQEDLMPLTFHK 95

Query: 251 IESQNLQVP-----HQSLPH*KACKMSGTP*CY 334
                 Q P          H  A K +G   CY
Sbjct: 96  NSDGEFQCPVLNKVFTEFTHIVAVKTTGNVFCY 128


>01_04_0091 - 15948192-15948905
          Length = 237

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 346 QRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREGPR 468
           Q   L T+ ++ +  L+ +D ACRV+A     V      PR
Sbjct: 156 QETSLTTSTEDAADMLWDYDRACRVVAVNAGVVLMCLHSPR 196


>07_03_1258 +
           25244863-25245282,25246419-25246568,25246665-25246877,
           25246979-25247068,25247311-25247424,25247881-25248150,
           25248251-25248407,25248691-25248741,25248742-25248819,
           25249357-25249457,25249832-25250002,25250136-25250210,
           25251527-25251793
          Length = 718

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 377 SCLAVCNCCLC-VKACN 330
           S LA C CC+C +KACN
Sbjct: 667 SRLADCLCCMCCIKACN 683


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 500 GAAMPAAVSVWRGPSRAAVTSFVSRAITRHAASC 399
           G  MP  V+   GPS A  T+F+S AI   A  C
Sbjct: 450 GKLMPGRVAAVMGPSGAGKTTFLS-AIAGKATGC 482


>04_04_0887 + 29095087-29096166
          Length = 359

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 385 HALYQHDAACRVIARLTKEVTAAREGPRH 471
           +A + HDA  R  A +  EV A  + PRH
Sbjct: 307 NAPHHHDAILRAFAEIWDEVFAGPDEPRH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,170
Number of Sequences: 37544
Number of extensions: 291280
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)