Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0175
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   7e-12
SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)                 33   0.18 
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             27   6.7  
SB_45282| Best HMM Match : SSF (HMM E-Value=0)                         27   6.7  
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)                       27   6.7  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_11437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 29/56 (51%), Positives = 39/56 (69%)
 Frame = +2

Query: 74  MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIK 241
           M+ YC+IS+        SP SG VFERR+IEKYI ENG DP+NG+ +  + LI++K
Sbjct: 1   MAFYCSISHEVPEHPCISPLSGNVFERRLIEKYIAENGTDPVNGEPMSEDQLIDVK 56



 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 32/45 (71%), Positives = 34/45 (75%)
 Frame = +1

Query: 373 QELSHALYQHDAACRVIARLTKEVTAAREGPRHTETAAGIAAPQA 507
           +ELSHALYQHDAACRVIARLTKEVTAARE     +  AGI    A
Sbjct: 56  KELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIVPTPA 100


>SB_47794| Best HMM Match : U-box (HMM E-Value=1.2e-28)
          Length = 121

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 128 PTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 229
           PTSG + ++ II ++++ +  DP N K L V  L
Sbjct: 53  PTSGKIMDKEIISRHLLSDQSDPFNRKHLTVSML 86


>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +1

Query: 244 TTYRKPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVI 423
           TT  +P P  AT+  +  K+++DE D       TQ   L++A  ++ H+L  +      I
Sbjct: 212 TTIIEPGPV-ATNFASNAKAIRDEVDISGTDEQTQAL-LKSALTKMYHSLTNYGQTPEEI 269

Query: 424 ARLTKEVTAAREGPRHTET 480
           A LTK+    +  P   +T
Sbjct: 270 AELTKKALLLKRPPLRLQT 288


>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +1

Query: 244 TTYRKPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVI 423
           TT  +P P  AT+  +  K+++DE D       TQ   L++A  ++ H+L  +      I
Sbjct: 467 TTIIEPGPV-ATNFASNAKAIRDEVDISGTDEQTQAL-LKSALTKMYHSLTNYGQTPEEI 524

Query: 424 ARLTKEVTAAREGPRHTET 480
           A LTK+    +  P   +T
Sbjct: 525 AELTKKALLLKRPPLRLQT 543


>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 131 TSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPI 253
           T G VF  + +  +I ENG  P+  ++L ++DL +I  PP+
Sbjct: 71  TCGHVFCSQCLVHWIAENGTCPLTCEQLAIDDLKKI--PPL 109


>SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACR 417
           +P PP   S PA       EW+ L L    Q ++ +   Q+L+    Q   A R
Sbjct: 460 EPLPPQPHSTPAASNMTTQEWNDLQLAMRLQDEERRQQEQQLATQQRQQTPATR 513


>SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 313 HLACFSVWQGLMWHLEVLAFYRWCFDLNKVLNSQLLAVNRIHAIFYYV 170
           H  CF  WQ L+ H E  +F R      + L S + A +  +    +V
Sbjct: 79  HWLCFLTWQSLLIHREKRSFSRMKMQTARELRSLIFAPHASNTFVAFV 126


>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 200 NGKELRVEDLIEIKTPPIES 259
           N K+LR+ D++ IKTPP+ +
Sbjct: 70  NVKDLRIIDMLVIKTPPLRT 89


>SB_45282| Best HMM Match : SSF (HMM E-Value=0)
          Length = 421

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 292 WQGLMWHLEVLAFYRWCFDLNKVLNSQLLAVNRIHA 185
           W GL   L ++  + WC D   ++   L A N +HA
Sbjct: 229 WLGLWTTLPIMGVWYWCTD-QVIVQRSLGAKNNVHA 263


>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
          Length = 519

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 271 LEVLAFYRWCFDLNKVLNSQLLAVNRIHAIFYYVLLNDSPFKHS 140
           L ++A    C   N ++N +  AVN++H +   + L +SP KHS
Sbjct: 148 LNLIANNAHCEHCNALINREEAAVNKVH-MNPNIALVESPTKHS 190


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 340 RHVT-SGRPTHLACFSVWQGLMWHLEVLAFYRWCFDLNKV 224
           +H+T +    H  CFS+ +G+   L+    +++CF+  K+
Sbjct: 131 KHITVTVSAMHYECFSIRKGIFVVLQAFKEWKFCFEAMKM 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,188
Number of Sequences: 59808
Number of extensions: 346384
Number of successful extensions: 954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)