Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0175
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...   105   1e-23
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    35   0.029
U20861-6|AAA62294.1|  256|Caenorhabditis elegans Temporarily ass...    30   0.84 
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     28   4.5  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     28   4.5  
Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   7.8  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   7.8  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   7.8  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score =  105 bits (253), Expect = 1e-23
 Identities = 48/67 (71%), Positives = 59/67 (88%)
 Frame = +1

Query: 259 PKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTK 438
           P+  S TSIP+ LK +QDEWD +ML++F+ RQQLQ ARQELSH+LYQHDAACRVI+RL+K
Sbjct: 64  PRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISRLSK 123

Query: 439 EVTAARE 459
           E+TAARE
Sbjct: 124 ELTAARE 130



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 28/73 (38%), Positives = 38/73 (52%)
 Frame = +2

Query: 74  MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPI 253
           MS  C IS         S  SG +F+RR+I K+I ENG DPI+  EL  + L+ +K+   
Sbjct: 1   MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGT 60

Query: 254 ESQNLQVPHQSLP 292
            S    V   S+P
Sbjct: 61  GSAPRNVSGTSIP 73


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +2

Query: 134 SGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIK 241
           S +V +  ++EK I  +G+DPING+ +  +D+IE++
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDIIELQ 286


>U20861-6|AAA62294.1|  256|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 327, isoform a protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 507 CLGCCNAGCGFSVARAFSRXRHLLCESGYHTTRCVVLVQC 388
           C  C + G  F+ A  F      LCE  YH +R  +  QC
Sbjct: 160 CFVCQHCGVSFNGASFFEHNGAPLCERHYHESRGSICSQC 199


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 246 GVLISIRSSTLNSLPLIGSTPFSIMYFSMILLSNT 142
           GVL+ I ++T  +L L+  TPF    F+M++L+ T
Sbjct: 264 GVLVGIPAATAMALLLMQYTPFEGFPFAMVVLAPT 298


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 PKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ 399
           P+ P+A  +   L + +DE     L+AF   ++L   R EL+ A Y+
Sbjct: 14  PEEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANYE 60


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 PKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ 399
           P+ P+A  +   L + +DE     L+AF   ++L   R EL+ A Y+
Sbjct: 36  PEEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANYE 82


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 PKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ 399
           P+ P+A  +   L + +DE     L+AF   ++L   R EL+ A Y+
Sbjct: 14  PEEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANYE 60


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 259 PKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ 399
           P+ P+A  +   L + +DE     L+AF   ++L   R EL+ A Y+
Sbjct: 36  PEEPTAPFVNDNLPNPEDEPTIGDLNAFHSGEELHRQRSELARANYE 82


>Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical
           protein F52B11.3 protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 455 RAAVTSFVSRAITRHAASCWYNA*LNSCLAVCNCCLCVKACNIRASHSSCMLFSVAGID 279
           +AA   F+  +I     +      ++ C+++C   L  K+ N   + SSC +++V   D
Sbjct: 308 QAAFERFIGSSIEGEVVASAQGVTISDCISLCFQNLNCKSINYDRTASSCFIYAVGRQD 366


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 356  CCLCVKACNIRASHSSCML 300
            C LCV  C+ + +H SC L
Sbjct: 1839 CALCVNNCSNKCAHRSCTL 1857


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 380 NSCLAVCNCCLCVKACNIRASHSSC 306
           N C  VC C    K CN +    SC
Sbjct: 770 NGCRQVCRCTSEYKQCNAQTGECSC 794


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 380 NSCLAVCNCCLCVKACNIRASHSSC 306
           N C  VC C    K CN +    SC
Sbjct: 770 NGCRQVCRCTSEYKQCNAQTGECSC 794


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 380 NSCLAVCNCCLCVKACNIRASHSSC 306
           N C  VC C    K CN +    SC
Sbjct: 770 NGCRQVCRCTSEYKQCNAQTGECSC 794


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 380 NSCLAVCNCCLCVKACNIRASHSSC 306
           N C  VC C    K CN +    SC
Sbjct: 770 NGCRQVCRCTSEYKQCNAQTGECSC 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,212
Number of Sequences: 27780
Number of extensions: 251319
Number of successful extensions: 729
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)