Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0175
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 256 KPKPPSATSIPATLKSMQD 312
           +P PPSAT +  T+  ++D
Sbjct: 297 QPTPPSATLVGTTITHLRD 315


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 464 GPSRAAVTSFVSRAITRHAASCWYNA*LNSCLAVCNCC 351
           GP   A+ S  S A +     C Y A    C A+C+CC
Sbjct: 718 GPRGVAIVS-ASTARSEQFL-CRYEA---HCFALCHCC 750


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 69  AKCLSIVRYQMKFPKYQWYHLRQELCLKGE 158
           A C  +V+    F   ++ ++  E CL GE
Sbjct: 423 ADCDFVVKLFKTFKDRKYLYMLMEACLGGE 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,438
Number of Sequences: 438
Number of extensions: 2813
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)