Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0175
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 93 1e-19
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 91 5e-19
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 91 5e-19
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 31 0.59
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 30 1.0
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 29 1.4
At1g12330.1 68414.m01425 expressed protein 28 3.1
At3g54590.1 68416.m06040 proline-rich extensin-like family prote... 28 4.2
At3g54580.1 68416.m06039 proline-rich extensin-like family prote... 28 4.2
At4g32285.1 68417.m04593 epsin N-terminal homology (ENTH) domain... 27 5.5
At2g37010.1 68415.m04539 ABC transporter family protein contains... 27 5.5
At1g11720.1 68414.m01345 starch synthase, putative strong simila... 27 5.5
At5g55060.1 68418.m06862 expressed protein 27 7.3
At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ... 27 9.6
At3g49410.1 68416.m05401 transcription factor-related contains w... 27 9.6
At1g72060.1 68414.m08330 expressed protein 27 9.6
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/68 (66%), Positives = 49/68 (72%)
Frame = +1
Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLT 435
KPKP SIP L + Q EWD+LML F QQL TARQELSHALYQHDAACRVIARL
Sbjct: 60 KPKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLK 119
Query: 436 KEVTAARE 459
KE +R+
Sbjct: 120 KERDESRQ 127
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 86 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPI 253
CAIS S SG ++E+R+I+ +I + G P+ G+ ++D++ IKT I
Sbjct: 3 CAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKI 58
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 90.6 bits (215), Expect = 5e-19
Identities = 49/84 (58%), Positives = 54/84 (64%)
Frame = +1
Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLT 435
KPK SIP L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL
Sbjct: 60 KPKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLK 119
Query: 436 KEVTAAREGPRHTETAAGIAAPQA 507
KE AR+ E AAP+A
Sbjct: 120 KERDEARQLLAEVERHIP-AAPEA 142
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 86 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPI 253
CAIS S SG +FERR+IE++I + G P+ G+ L ++D++ IKT I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEI 58
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 90.6 bits (215), Expect = 5e-19
Identities = 49/84 (58%), Positives = 54/84 (64%)
Frame = +1
Query: 256 KPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLT 435
KPK SIP L + Q+EWD LML F QQL TARQELSHALYQHD+ACRVIARL
Sbjct: 60 KPKTLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLK 119
Query: 436 KEVTAAREGPRHTETAAGIAAPQA 507
KE AR+ E AAP+A
Sbjct: 120 KERDEARQLLAEVERHIP-AAPEA 142
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 86 CAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPI 253
CAIS S SG +FERR+IE++I + G P+ G+ L ++D++ IKT I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEI 58
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 83 YCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLIEI 238
YC G+VFE I YI + G P+ G L+ EDLI +
Sbjct: 40 YCCALTFLPFEDPVCTIDGSVFEITTIVPYIRKFGKHPVTGAPLKGEDLIPL 91
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = -3
Query: 500 GAAMPAAVSVWRGPSRAAVTSFVSRAITRHAASCWYNA*LNSCLAVCNCCLCVKACNI 327
G+ P + GPS R+ C + L SCL C CC+ CNI
Sbjct: 2 GSKQPYLNGAYYGPSIPPPPK-AHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNI 58
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 188 VDPINGKELRVEDLIEIKTPPIESQNLQVPHQSLPH 295
VD + G+ R +D++EI+ E L+ ++LPH
Sbjct: 18 VDGVGGRRRREDDMVEIRKAKREESLLKKRREALPH 53
>At1g12330.1 68414.m01425 expressed protein
Length = 505
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 238 QNTTYRKPKPPSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQ 399
Q+ T R PKP SAT+ S DA ++ +Q + A ELSH L Q
Sbjct: 140 QSLTRRSPKPSSATAALPPRSSSSSAADA------SREEQWRLAVAELSHKLIQ 187
>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 743
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 245 PPIESQNLQVPHQSLPH*KACKMSGTP*CYMPS 343
PP S + +V ++S PH C P CY PS
Sbjct: 648 PPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPS 680
>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 951
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 245 PPIESQNLQVPHQSLPH*KACKMSGTP*CYMPS 343
PP S + +V ++S PH C P CY PS
Sbjct: 673 PPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPS 705
>At4g32285.1 68417.m04593 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related Aux22d, Vigna radiata, PID:D1021691;
contains Pfam PF01417: ENTH domain. ENTH (Epsin
N-terminal homology) domain; similar to clathrin
assembly protein AP180 (GI:6492344) [Xenopus laevis]
Length = 635
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 268 EVLAFYRWCFDLNKVLNSQLLAVNRI 191
E++AFY WC D +S+ V RI
Sbjct: 316 ELIAFYHWCKDTGVARSSEYPEVQRI 341
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 500 GAAMPAAVSVWRGPSRAAVTSFVSRAITRHAASC 399
G MP VS GPS A T+F+S A+ A C
Sbjct: 487 GKIMPGRVSAVMGPSGAGKTTFLS-ALAGKATGC 519
>At1g11720.1 68414.m01345 starch synthase, putative strong
similarity to soluble-starch-synthase [Solanum
tuberosum] GI:1911166
Length = 1025
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 149 ERRIIEKYIIENGVDPINGKELRVEDLIEIKTPPIESQNLQ 271
ER ++++ IE+G D ++ K +DL+E K +E +NL+
Sbjct: 69 ERNVLDRSDIEDGSDRLDKKTTDDDDLLEQKL-KLERENLR 108
>At5g55060.1 68418.m06862 expressed protein
Length = 645
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 383 LNSCLAVCNCCLCVKACNIRASHS 312
L+ L V NCCL KA N+ AS +
Sbjct: 266 LHQWLQVINCCLARKARNVAASEA 289
>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 892
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 14 HVILRLRAEFSNLYSDIISKMSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVD 193
H++L L+ + NL + YCA+ P ++ + R+I+ +I E +D
Sbjct: 388 HILLILKYSYDNLNDKHVRSCFQYCAL----------YPEDYSIKKYRLIDYWICEGFID 437
Query: 194 PINGKELRVEDLIEI 238
GKE V EI
Sbjct: 438 GNIGKERAVNQGYEI 452
>At3g49410.1 68416.m05401 transcription factor-related contains weak
similarity to transcription factor IIIC63 (GI:5281316)
[Homo sapiens]
Length = 559
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 167 KYIIENGVDPINGKELRVEDLIEIKTPP 250
++ I+ G DP N E RV +E + PP
Sbjct: 282 RFWIKRGYDPRNDPESRVYQRMEFRVPP 309
>At1g72060.1 68414.m08330 expressed protein
Length = 81
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 362 CNCCLCVKACNIRASHSS 309
CNCCL K C + S S+
Sbjct: 58 CNCCLAPKNCTLHLSDST 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,445,442
Number of Sequences: 28952
Number of extensions: 224190
Number of successful extensions: 558
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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