Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0173
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    34   0.015
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   0.31 
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   0.72 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.2  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   2.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   5.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   5.1  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   8.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.9  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 33.9 bits (74), Expect = 0.015
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +1

Query: 70  SRALLTRACFRIGYAIAKRLGSEGA--SVVICSRKESNVGKAVQSLRSEGITVEGVVCHV 243
           S + LT A F +  +I +RL  +G   + V+ + +E  V    +  R +GIT+   + H 
Sbjct: 76  SASSLTEAIFTLDNSIQERLNFQGKPFTFVVMNGRELRV-LLPKEARDQGITLPSYMRHP 134

Query: 244 ANHDIGDDYLKW 279
              D+  +Y KW
Sbjct: 135 RLFDLSSEYAKW 146


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 43  LTGFFRMSYSRALLTRACFRIGYAIAKRLGSEGASV-VICSRKESNVGKAVQSLRSEGIT 219
           +T  F +     L+T     IG++IAK   + G++V ++  R +  +  A +     G+ 
Sbjct: 1   MTSMFSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQ 60

Query: 220 VEGVVCHVAN 249
            +   C + N
Sbjct: 61  AKAYSCPIEN 70


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 58  RMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSRKESNV 180
           + ++S  L+T +   +GYA+ K   ++G +V+ CSR    +
Sbjct: 2   KSTFSTVLITGSSKGLGYALVKVGLAQGYNVIACSRAPDTI 42


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 242 T*QTTPSTVMPSLRRLCTAFPTLLSFRLQMTTEAPSLPSLLAIAYP 105
           T  +TPST+  S  +  T+ P        +TT APSL S L   YP
Sbjct: 297 TIDSTPSTIATSTLQPTTSSP--------ITTSAPSLSSALPTTYP 334


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 28  IAQFTLTGFFRMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSR 165
           +A  T  G   +   RA L R C R+ Y++A  +     S++ C R
Sbjct: 371 VASSTRVGHL-IGSGRANLARLCSRVAYSLALCISIFDGSLIFCFR 415


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 179 LGKLCRASEARALQWKESSVTSPI 250
           L +LCR    R LQ+++ ++TS +
Sbjct: 764 LNELCRMENKRLLQYEDRAITSEV 787


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 206 LRRLCTAFPTLLSFRLQ 156
           L RLC +FPTL S+ L+
Sbjct: 900 LHRLCRSFPTLQSYTLK 916


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 VEGVVCHVANHDIGDDYLKWPQVSLAE 300
           V+ + C++  H  G DYL W +  LAE
Sbjct: 590 VKFLECNMNKHSEGLDYLTWIKQLLAE 616


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  DRNCSVYTNRFLQNVVFSSPIN 86
           DR+C  +T +FL  +  + PI+
Sbjct: 575 DRSCESFTRQFLNAIYLAKPIS 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,077
Number of Sequences: 5004
Number of extensions: 39529
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)