Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0173
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0170 - 2459344-2459493,2459720-2459784,2459905-2459963,246... 70 1e-12
03_05_0532 - 25322822-25322932,25323018-25323050,25323187-253232... 41 7e-04
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835... 40 9e-04
04_03_0100 + 11232801-11232889,11233417-11233624,11233907-112341... 40 0.001
03_02_0501 - 8920458-8920646,8920918-8921024,8921136-8921352,892... 40 0.002
11_04_0128 + 13752727-13752809,13752922-13753129,13753238-137533... 39 0.002
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890... 39 0.002
03_02_0500 - 8915300-8915349,8915567-8915717,8916308-8916516,891... 39 0.003
04_04_1139 + 31173271-31173462,31173928-31174087,31174318-311744... 38 0.004
09_02_0400 - 8574836-8575121,8575473-8575549 37 0.008
11_04_0125 + 13723966-13724011,13724282-13724430,13725100-137251... 37 0.011
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042 33 0.10
11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877 33 0.10
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 2.9
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 29 2.9
07_01_0500 + 3744062-3744847 28 3.9
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 28 5.1
12_02_0775 - 23049842-23051299 27 8.9
>09_01_0170 -
2459344-2459493,2459720-2459784,2459905-2459963,
2460441-2460487,2460793-2460894,2461810-2461935,
2462035-2462169,2463396-2463512,2463583-2463714
Length = 310
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = +1
Query: 58 RMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVC 237
R+ A++T + IG AIA+RLG EGA+VVI SRK+ NV +AV LR++GITV GVVC
Sbjct: 7 RLEGKVAVVTASTQGIGLAIAERLGLEGAAVVISSRKKKNVDEAVVGLRAKGITVVGVVC 66
Query: 238 HVA 246
HV+
Sbjct: 67 HVS 69
>03_05_0532 -
25322822-25322932,25323018-25323050,25323187-25323222,
25323301-25323336,25323431-25323479,25323671-25323762,
25323899-25323984,25324098-25324261,25325573-25325601,
25325697-25325807,25326471-25326512,25326597-25326647,
25326848-25326898,25327325-25327382,25327823-25327908,
25328008-25328056,25328155-25328273,25328504-25328590,
25328726-25328787,25329222-25329290,25329884-25330133
Length = 556
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 79 LLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSE--GITVEGVVCHV 243
L+T + IGYA+AK G +VVICSR V AV L+ E V G+VC V
Sbjct: 77 LITGSTKGIGYALAKEFLKAGDNVVICSRSAERVESAVTDLKKEFGEQHVWGIVCDV 133
>11_04_0145 +
14082864-14082946,14083060-14083267,14083383-14083599,
14084170-14084276,14085521-14085674,14086848-14087029
Length = 316
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +1
Query: 55 FRMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVV 234
F ++ + AL+T IG AI + L S GA+V C+R ++ + + + ++G+ V V
Sbjct: 11 FSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNQAELSRCQEEWTAKGLAVTVSV 70
Query: 235 CHVA 246
C VA
Sbjct: 71 CDVA 74
>04_03_0100 +
11232801-11232889,11233417-11233624,11233907-11234129,
11234214-11234221
Length = 175
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 46 TGFFRMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVE 225
TG + ++ + AL+T IG AI + L S GA+V C+R E+ + ++ ++ +++
Sbjct: 10 TGRWSLAGATALVTGGSKGIGRAIVEELASFGATVHTCARNEATLNSCLEEWSAKKLSIT 69
Query: 226 GVVCHVA 246
VC V+
Sbjct: 70 SSVCDVS 76
>03_02_0501 -
8920458-8920646,8920918-8921024,8921136-8921352,
8921744-8922157
Length = 308
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 88 RACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
R F +A+ L + GA+V CSRKE+ +G+ ++ +G V G VC V+
Sbjct: 63 RGEFMRRHAVVDELAALGAAVHTCSRKEAELGERLREWEGKGFRVTGSVCDVS 115
>11_04_0128 +
13752727-13752809,13752922-13753129,13753238-13753303,
13753611-13753767,13755629-13755712,13756355-13756461,
13756832-13756958,13757319-13757407,13757812-13757943
Length = 350
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
AL+T IG AI + L S GA+V C+R E+ + + + L ++G+ V VC V+
Sbjct: 18 ALVTGGSKGIGRAIVEELASLGATVHTCARTEAPLNRCREELTAKGLAVTVSVCDVS 74
>03_02_0499 -
8908323-8908423,8908822-8908972,8909761-8909867,
8909954-8910170,8910941-8911148,8911261-8911358
Length = 293
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L + GA+V CSR E+ +G+ ++ + G V VC ++ D
Sbjct: 23 ALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTISVCDLSARD 82
>03_02_0500 -
8915300-8915349,8915567-8915717,8916308-8916516,
8916592-8916808,8917515-8917722,8917839-8917939
Length = 311
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L + GA+V CSRKE + + ++ + G V VC ++ D
Sbjct: 24 ALVTGGTRGIGRAVVEELAALGATVHTCSRKEEELSERLKEWEARGFRVTTSVCDLSVRD 83
>04_04_1139 +
31173271-31173462,31173928-31174087,31174318-31174487,
31174566-31174788,31175053-31175207
Length = 299
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEG 228
AL+T IG+ IA +L GA V I R+ + KAV +LRS G+ G
Sbjct: 17 ALVTGGGSGIGFEIAAQLARHGAHVAIMGRRREVLDKAVAALRSHGLRAVG 67
>09_02_0400 - 8574836-8575121,8575473-8575549
Length = 120
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 88 RACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
R R+G A+ L + GA+V CSR E+ +G+ ++ G V G V V+ D
Sbjct: 20 RRHLRLGRAVVDELAALGAAVHTCSRNEAELGERLREWEGRGFRVTGSVRDVSVRD 75
>11_04_0125 +
13723966-13724011,13724282-13724430,13725100-13725197,
13725321-13725528,13725678-13725695
Length = 172
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
AL+T IG AI + L G++V C+R E+ + + + L ++G+ V VC V+
Sbjct: 88 ALVTGRSKGIGRAIVEELVGFGSTVHTCARSEAELSRCQEELTAKGLAVSFSVCDVS 144
>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
Length = 268
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
AL+T IG+AI + L GA V C+R + + + + G+ V VC V+
Sbjct: 20 ALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTATVCDVS 76
>11_06_0581 - 25189303-25189470,25190178-25190715,25190789-25190877
Length = 264
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
AL+T IG+AI + L GA V C+R + + + + G+ V VC V+
Sbjct: 20 ALVTGGSKGIGHAIVEELAGFGARVHTCARNAAELEASRRRWEERGLRVTATVCDVS 76
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 214 ITVEGVVCHVANHDIGDDYLKWPQVSLAEWISWYQTPRSIQRWLRS*IVSTNGGIYTSNS 393
+TV VC + Y W ++ + EW P ++R +R +V+ +GG + S
Sbjct: 31 LTVVPRVCKSWGRVVAGPYC-WQEIDIQEWSQQQSKPDQLKRMVRM-LVARSGGSFHRIS 88
Query: 394 LEG 402
+ G
Sbjct: 89 VSG 91
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -1
Query: 321 RLIPGYPLRQTYLWPLQIIVSYVMI 247
R+IPG +++Y+W LQI +S+ ++
Sbjct: 103 RIIPGQRTKRSYIWQLQIDLSHHVV 127
>07_01_0500 + 3744062-3744847
Length = 261
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVV 234
A++T A IG AIA L S GASVV+ S +A+ + + V+ V
Sbjct: 22 AIVTGASRGIGRAIAIHLASLGASVVVGYASSSGPAEALAAELPSAVAVKADV 74
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 133 SEGASVVICSRKESNVGKAVQSLR 204
SEG+S+ +CSR + G VQS+R
Sbjct: 1276 SEGSSMPMCSRINKDDGNVVQSIR 1299
>12_02_0775 - 23049842-23051299
Length = 485
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 240 VTDDSFHCNALASEALHSFPNVALFPAA 157
V DSFH A + A H P VAL P+A
Sbjct: 124 VIADSFHHWAAPAAARHGVPCVALLPSA 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,456
Number of Sequences: 37544
Number of extensions: 284174
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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