Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0173
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.080
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)             31   0.74 
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   2.3  
SB_37524| Best HMM Match : p450 (HMM E-Value=0)                        29   3.0  
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          28   4.0  
SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)            27   9.2  

>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQS-LRSEGITVEGVVCHVANH 252
           A++T     IG A  +RL  EGASV I    +  +G+ V++ LRS G  V+     VAN 
Sbjct: 27  AIVTGGASGIGKATVERLAREGASVAILDIND-ELGQQVETDLRSSGNKVKFYHVDVANK 85

Query: 253 DI 258
           D+
Sbjct: 86  DM 87


>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
          Length = 384

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSL 201
           A++T     IG AIA  L S G+ VVI SR E  + KA   L
Sbjct: 19  AIVTGGGTGIGKAIAAELLSLGSKVVIASRSEGKLQKAAVDL 60


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEG 213
           A++T A   IG A+AK L   G  V + +R+E  + +    + + G
Sbjct: 107 AIVTGASSGIGAAVAKALAEAGVKVALAARREERLTQLRDEIIANG 152


>SB_37524| Best HMM Match : p450 (HMM E-Value=0)
          Length = 362

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 154 ICSRKESNVGKAVQSLRSEGITVEGVVC 237
           +C+R ES+ GK     +  GI V  V+C
Sbjct: 18  LCNRLESSAGKPFDITQQSGIAVTNVIC 45


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 199 LRSEGITVEGVVCHVANHDIGDDYLKWP 282
           + S+ + V+GV CH+A  D G + +K P
Sbjct: 15  MTSDMVKVQGVTCHLAFFDYGPNEIKKP 42


>SB_32931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.1)
          Length = 815

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 67  YSRALLTRACFRIGYAIAKRLGSEG 141
           Y+RA   + CF IGYA A  L  EG
Sbjct: 517 YARAYKRKYCFTIGYAFAWALLFEG 541


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,704
Number of Sequences: 59808
Number of extensions: 306942
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)