Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0173
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-1|AAB66092.1|  257|Caenorhabditis elegans Dehydrogenase...    66   1e-11
Z81592-12|CAB04734.1|  260|Caenorhabditis elegans Hypothetical p...    57   9e-09
Z79696-3|CAB01974.1|  260|Caenorhabditis elegans Hypothetical pr...    57   9e-09
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       30   0.85 
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    30   0.85 
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    30   0.85 
Z79756-2|CAB02118.1|  313|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical ...    28   3.4  
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF016668-1|AAB66092.1|  257|Caenorhabditis elegans Dehydrogenases,
           short chain protein13 protein.
          Length = 257

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
           AL+T +   IG+AIAK+LG+ GASVV+CSRK+ NV +AV +LR E I   G   HV N
Sbjct: 14  ALVTASTKGIGFAIAKQLGAAGASVVVCSRKKENVDEAVAALRLENIDAHGTTAHVGN 71


>Z81592-12|CAB04734.1|  260|Caenorhabditis elegans Hypothetical
           protein F54F3.4 protein.
          Length = 260

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGIT-VEGVVCHVANH 252
           A++T A   IG AIA+RL  EGASVVI SR + NV +A++ L+++G+T V G+  H+A+ 
Sbjct: 13  AIVTAATKGIGLAIAERLLDEGASVVIGSRNQKNVDEAIEYLKNKGLTKVAGIAGHIAST 72

Query: 253 D 255
           D
Sbjct: 73  D 73


>Z79696-3|CAB01974.1|  260|Caenorhabditis elegans Hypothetical
           protein F54F3.4 protein.
          Length = 260

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGIT-VEGVVCHVANH 252
           A++T A   IG AIA+RL  EGASVVI SR + NV +A++ L+++G+T V G+  H+A+ 
Sbjct: 13  AIVTAATKGIGLAIAERLLDEGASVVIGSRNQKNVDEAIEYLKNKGLTKVAGIAGHIAST 72

Query: 253 D 255
           D
Sbjct: 73  D 73


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 192  HSFPNVALFPAADDYGSTFTSQPLSYC 112
            HS PN+   P AD Y ++FT   + YC
Sbjct: 1366 HSDPNLPPHPRADQYPASFTRPMVEYC 1392


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 192  HSFPNVALFPAADDYGSTFTSQPLSYC 112
            HS PN+   P AD Y ++FT   + YC
Sbjct: 1366 HSDPNLPPHPRADQYPASFTRPMVEYC 1392


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 192  HSFPNVALFPAADDYGSTFTSQPLSYC 112
            HS PN+   P AD Y ++FT   + YC
Sbjct: 1366 HSDPNLPPHPRADQYPASFTRPMVEYC 1392


>Z79756-2|CAB02118.1|  313|Caenorhabditis elegans Hypothetical
           protein F53C11.3 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +1

Query: 76  ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
           AL+T     +G AIA      GASV I +R+   + K    +RS      G VC     D
Sbjct: 29  ALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSS----TGGVCEPFQMD 84

Query: 256 IGD 264
           + D
Sbjct: 85  VKD 87


>AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical
           protein Y67D8A.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 182 PTLLSFRLQMTTEAPSLPSLLAIAYPILKQALVN 81
           P L+SF LQ T +    PS +++A P+L    +N
Sbjct: 212 PALISFLLQPTQQPSFEPSTMSLAPPVLFPTFLN 245


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  LTGFFRMSYSRALLTRACFRIGY 111
           L  FF   Y+R + T ACF  GY
Sbjct: 184 LRSFFNWGYARLVFTLACFICGY 206


>AC024750-3|AAF60440.1|  384|Caenorhabditis elegans Hypothetical
           protein Y17G9A.4 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -1

Query: 309 GYPLRQTYLWPLQI--IVSYVMIGD--VTDD 229
           G PL+  Y+WP  +  IV YV+  D  VT+D
Sbjct: 52  GIPLKMDYIWPQNVKKIVDYVIENDMHVTND 82


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 293 WRSGYPGIKRRGQSSGGFDLRSYQPTEVFTLLIH*KDTWSSVCRRHLEQ 439
           +R+ +PGI  + ++   FDL + +  E+   LI+   T+S   R HLEQ
Sbjct: 640 FRTRHPGIMEKLRTLTVFDLEAPERLEIVKTLIYQLLTYSKF-RGHLEQ 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,409
Number of Sequences: 27780
Number of extensions: 218002
Number of successful extensions: 526
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)