Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0173
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   10.0 

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 119 LRGWEVKVLP*SSAAGKRATLGKLCRASEARALQWKESSVT 241
           L+G +    P S      A + KLCR + A  L +++  ++
Sbjct: 578 LKGIDAIEFPRSITRNATALIKKLCRDNPAERLGYQKGGIS 618


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 223 EGVVCHVANHDIGDDYLKWPQVSLAEWISWYQTPRSIQRWLRS*IVSTNGGIYTSNSLEG 402
           EG + H+A H +   +L    +    WISW +  +     L     S N G++   S   
Sbjct: 367 EGWIHHLARHAVAC-FLTRGDL----WISWEEGMKVFDELLLDADWSVNAGMWMWLSCSS 421

Query: 403 YLEQ 414
           + +Q
Sbjct: 422 FFQQ 425


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 300 LRQTYLWPLQIIVSYVMIGDVTDDSFHCNALASEA 196
           +R   L  L+ +  + MIGDV  D F    L S +
Sbjct: 391 IRSIGLKCLEYLFFFKMIGDVPIDDFLVEMLESRS 425


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 300 LRQTYLWPLQIIVSYVMIGDVTDDSFHCNALASEA 196
           +R   L  L+ +  + MIGDV  D F    L S +
Sbjct: 391 IRSIGLKCLEYLFFFKMIGDVPIDDFLVEMLESRS 425


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 512 FSRDISYVSV*SRGELXYN*NSAFIAQDDDGTRCSR 405
           F  DI  V+   RGEL Y  +   +A+ +    C+R
Sbjct: 218 FEGDIRIVNKDRRGELFYYMHQQIMARYNCERLCNR 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,470
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)