Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0173
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SD... 67 8e-12
At2g29320.1 68415.m03561 tropinone reductase, putative / tropine... 44 5e-05
At2g29310.1 68415.m03560 tropinone reductase, putative / tropine... 44 5e-05
At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase (SD... 44 8e-05
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD... 43 1e-04
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD... 43 1e-04
At2g30670.1 68415.m03740 tropinone reductase, putative / tropine... 42 2e-04
At2g29300.1 68415.m03559 tropinone reductase, putative / tropine... 42 2e-04
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine... 39 0.002
At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SD... 39 0.002
At1g07450.1 68414.m00795 tropinone reductase, putative / tropine... 38 0.003
At2g29360.1 68415.m03567 tropinone reductase, putative / tropine... 38 0.004
At2g29170.1 68415.m03546 short-chain dehydrogenase/reductase (SD... 38 0.004
At2g29370.1 68415.m03568 tropinone reductase, putative / tropine... 38 0.005
At2g29330.1 68415.m03562 tropinone reductase, putative / tropine... 38 0.005
At2g29350.2 68415.m03565 tropinone reductase, putative / tropine... 37 0.007
At2g29350.1 68415.m03566 tropinone reductase, putative / tropine... 37 0.007
At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SD... 36 0.012
At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SD... 36 0.016
At2g29260.1 68415.m03555 tropinone reductase, putative / tropine... 36 0.016
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine... 34 0.049
At1g07440.1 68414.m00794 tropinone reductase, putative / tropine... 33 0.086
At2g29290.1 68415.m03558 tropinone reductase, putative / tropine... 33 0.15
At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD... 33 0.15
At5g61830.1 68418.m07758 short-chain dehydrogenase/reductase (SD... 30 1.1
At1g34410.1 68414.m04273 transcriptional factor B3 family protei... 29 1.4
At4g19340.1 68417.m02849 hypothetical protein 28 3.2
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr... 28 3.2
At4g19260.1 68417.m02840 kelch repeat-containing protein contain... 28 3.2
At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase, ... 27 5.7
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 27 7.5
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden... 27 7.5
>At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SDR)
family protein similar to peroxisomal short-chain
alcohol dehydrogenase GI:4105190 from [Homo sapiens]
Length = 254
Score = 66.9 bits (156), Expect = 8e-12
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = +1
Query: 58 RMSYSRALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVC 237
R+ A++T + IG+ I +R G EGASVV+ SRK++NV +AV L+S+GI G+VC
Sbjct: 8 RLEGKVAIVTASTQGIGFGITERFGLEGASVVVSSRKQANVDEAVAKLKSKGIDAYGIVC 67
Query: 238 HVAN 249
HV+N
Sbjct: 68 HVSN 71
>At2g29320.1 68415.m03561 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 269
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANH 252
AL+T A IGYAI + L GA + IC ++ + +++ ++G V G VC V +H
Sbjct: 18 ALVTGAASGIGYAIVEELAGFGAKIHICDISKTLLNQSLSEWENKGFQVSGSVCDVTSH 76
>At2g29310.1 68415.m03560 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 262
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T A IGYAI + L S GA + IC E+ + +++ +G V G +C VA+
Sbjct: 12 ALVTGAASGIGYAIVEELASFGAIIHICDISETLLSQSLSEWEKKGFQVSGSICDVAS 69
>At5g04900.1 68418.m00515 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 348
Score = 43.6 bits (98), Expect = 8e-05
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 79 LLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSE-GITVEGVVCHV 243
L+T + IGYA+A+ G +VVICSR V AVQSL+ E G V G C V
Sbjct: 83 LITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVWGTKCDV 138
>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
family protein similar to tropinone reductase-I
GI:424160 from [Datura stramonium]
Length = 262
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T IGYAI + L GA + +C E+ + +++ +G V G VC VA+
Sbjct: 12 ALVTGGASGIGYAIVEELAGFGARIHVCDISEAKLNQSLSEWEKKGFQVSGSVCDVAS 69
>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
family protein similar to tropinone reductase-I
GI:424160 from [Datura stramonium]
Length = 307
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T IGYAI + L GA + +C E+ + +++ +G V G VC VA+
Sbjct: 12 ALVTGGASGIGYAIVEELAGFGARIHVCDISEAKLNQSLSEWEKKGFQVSGSVCDVAS 69
>At2g30670.1 68415.m03740 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 262
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANH 252
AL+T IG+AI + L GA + +C E+ + +++ +G V G +C V++H
Sbjct: 12 ALVTGGASGIGHAIVEELAGLGARIYVCDISETLLNQSLSEWEKKGFQVSGSICDVSSH 70
>At2g29300.1 68415.m03559 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 263
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T A IGYAI + L GA + +C E+ + ++++ +G V G VC V +
Sbjct: 12 ALVTGAASGIGYAIVEELAGFGARIHVCDISETLLNQSLREWEKKGFQVSGSVCDVTS 69
>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 264
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L GA V CSR + + + ++ G+ V G VC + D
Sbjct: 14 ALVTGGTRGIGRAVVEELAKFGAKVHTCSRNQEELNACLNDWKANGLVVSGSVCDASVRD 73
>At3g12800.1 68416.m01597 short-chain dehydrogenase/reductase (SDR)
family protein contains Pfam profile
PF00106:oxidoreductase, short chain
dehydrogenase/reductase family
Length = 298
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGV 231
AL+T IG+ I+ + G GAS+ I R++ + AV +LRS GI G+
Sbjct: 15 ALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGL 66
>At1g07450.1 68414.m00795 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 260
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T IGYAI + L GA V IC E+ + + + ++G V G +C V++
Sbjct: 13 ALVTGGSKGIGYAIVEELVGFGARVHICDIDETLLNECLSGWHAKGFEVSGSICDVSS 70
>At2g29360.1 68415.m03567 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 271
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L + GA + C+R E+ + ++++ +++G V VC V++ D
Sbjct: 21 ALVTGGSKGIGEAVVEELATLGARIHTCARDETQLQESLRKWQAKGFQVTTSVCDVSSRD 80
>At2g29170.1 68415.m03546 short-chain dehydrogenase/reductase (SDR)
family protein / tropinone reductase, putative similar
to tropinone reductase SP:P50165 from [Datura
stramonium]
Length = 107
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T +G A+ + L GA V C+R E+ + + V+ +++G V VC V++ D
Sbjct: 21 ALVTGGSKGLGEAVVEELAMLGARVHTCARNETQLQECVREWQAKGFEVTTSVCDVSSRD 80
>At2g29370.1 68415.m03568 tropinone reductase, putative / tropine
dehydrogenase, putative similar to SP|P50162 Tropinone
reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase) {Datura stramonium}
Length = 268
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T +G A+ + L GA V C+R E+ + ++++ +++G+ V VC V++ D
Sbjct: 21 ALVTGGSKGLGKAVVEELAMLGARVHTCARDETQLQESLREWQAKGLQVTTSVCDVSSRD 80
>At2g29330.1 68415.m03562 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 260
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T IG+AI + L GA + +C ++ + +++ +G V G VC +N
Sbjct: 12 ALVTGGASGIGHAIVEELAGFGAKIHVCDISKTLLNQSLSEWEKKGFQVSGSVCDASN 69
>At2g29350.2 68415.m03565 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 225
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L GA V C+R E+ + + ++ +++G V VC V++ D
Sbjct: 20 ALVTGGSKGIGEAVVEELAMLGAKVHTCARDETQLQERLREWQAKGFQVTTSVCDVSSRD 79
>At2g29350.1 68415.m03566 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 269
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T IG A+ + L GA V C+R E+ + + ++ +++G V VC V++ D
Sbjct: 20 ALVTGGSKGIGEAVVEELAMLGAKVHTCARDETQLQERLREWQAKGFQVTTSVCDVSSRD 79
>At3g61220.1 68416.m06851 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 296
Score = 36.3 bits (80), Expect = 0.012
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSE 210
A++T A IG+ I ++L SEG VV+ SR E+ +AV++L+ E
Sbjct: 9 AVVTGANRGIGFEICRQLASEGIRVVLTSRDENRGLEAVETLKKE 53
>At3g59710.1 68416.m06662 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 302
Score = 35.9 bits (79), Expect = 0.016
Identities = 30/80 (37%), Positives = 42/80 (52%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
A++T A IG+A+ KRL G +VV+ +R N +A +SLR G G V H D
Sbjct: 31 AVVTGANKGIGFAVVKRLLELGLTVVLTARNAENGSQAAESLRRIGF---GNV-HFCCLD 86
Query: 256 IGDDYLKWPQVSLAEWISWY 315
I D P S+A + SW+
Sbjct: 87 ISD-----PS-SIAAFASWF 100
>At2g29260.1 68415.m03555 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 322
Score = 35.9 bits (79), Expect = 0.016
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVAN 249
AL+T IG AI + L GA V C+R E + + G V G VC V++
Sbjct: 73 ALVTGGTRGIGRAIVEELAGLGAEVHTCARNEYELENCLSDWNRSGFRVAGSVCDVSD 130
>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 268
Score = 34.3 bits (75), Expect = 0.049
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
AL+T +G A+ + L GA V C+R E+ + + ++ +++G V VC V++ +
Sbjct: 21 ALVTGGSKGLGEAVVEELAMLGARVHTCARDETQLQERLREWQAKGFEVTTSVCDVSSRE 80
>At1g07440.1 68414.m00794 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 266
Score = 33.5 bits (73), Expect = 0.086
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 79 LLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVC 237
L+T IG+AI + GA + C+R E + + + + +G V G VC
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVC 70
>At2g29290.1 68415.m03558 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 262
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVA 246
AL+T IG A+ + L GA V C+R E+ + + ++ + +G V +C V+
Sbjct: 12 ALVTGGTKGIGEAVVEELSILGARVHTCARDETQLQERLREWQEKGFQVTTSICDVS 68
>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 295
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSE-GITVEGVVCH 240
A++T + IG+ I ++L + G +VV+ +R E+ AVQ L++E G + + + H
Sbjct: 7 AVVTGSNKGIGFEICRQLANNGITVVLTARDENKGLAAVQKLKTENGFSDQAISFH 62
>At5g61830.1 68418.m07758 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 316
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 76 ALLTRACFRIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLR--SEGITV 222
A++T + IG+ IA++L G +VV+ +R + +AV+SLR EG+ V
Sbjct: 39 AVVTGSNRGIGFEIARQLAVHGLTVVLTARNVNAGLEAVKSLRHQEEGLKV 89
>At1g34410.1 68414.m04273 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 606
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 200 RLCTAFPTLLSFRLQMTTEAPSLPSLLAIAYPILKQALVN 81
+L A P +S R + TTEA PS L ++YP+ +N
Sbjct: 397 QLSVASPMNISLRYRDTTEAAMNPSRLLMSYPVQPMPKLN 436
>At4g19340.1 68417.m02849 hypothetical protein
Length = 232
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 160 SRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
+R S +G + +E + +EGV+ HV HD
Sbjct: 123 ARHNSAIGHVGSLITTEDVRIEGVISHVKFHD 154
>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
protein very low similarity to SKP1 interacting partner
6 [Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 537
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 160 SRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
+R S +G + +E + +EGV+ HV HD
Sbjct: 119 ARHNSAIGHVGSLITTEDVRIEGVISHVKFHD 150
>At4g19260.1 68417.m02840 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 288
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 160 SRKESNVGKAVQSLRSEGITVEGVVCHVANHD 255
+R S +G + +E + +EGV+ HV HD
Sbjct: 123 ARHNSAIGHVGSLITTEDVRIEGVISHVKFHD 154
>At3g14530.1 68416.m01841 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to SP|P34802
Geranylgeranyl pyrophosphate synthetase, chloroplast
precursor (GGPP synthetase) (GGPS) [Includes:
Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10);
Farnesyltranstransferase (EC 2.5.1.29)] {Arabidopsis
thaliana}; contains Pfam profile PF00348: Polyprenyl
synthetase
Length = 360
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 167 FRLQMTTEAPSLPSLLAIAYPILKQALVNRAREYDIL 57
F+L M +A S+ + L ++ P+LK + A Y +L
Sbjct: 66 FKLYMIRKAESVNAALDVSVPLLKPLTIQEAVRYSLL 102
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 211 GITVEGVVCHVANHDIGDDYLKWPQVSLAEWISW 312
G+ VEG + H +G DY P + L W W
Sbjct: 1014 GLVVEGRPWKLVKHKLGKDY---PTIQLTAWKFW 1044
>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
[Arabidopsis thaliana]; contains Pfam profiles PF01966:
HD domain, PF04607: Region found in RelA / SpoT proteins
Length = 712
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +1
Query: 139 GASVVICSRKESN---VGKAVQSLR---SEGITVEGVVCHVANHDIGDDYLK 276
GASV S S+ VG+ + S+R SE T+ G C+ + IG YLK
Sbjct: 59 GASVKSSSSSSSSHPSVGEELASIRHDRSEDRTLSGSFCYSPSKFIGSSYLK 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,996
Number of Sequences: 28952
Number of extensions: 213740
Number of successful extensions: 470
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -