Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0172
         (665 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089271-1|AAL90009.1|  451|Drosophila melanogaster AT07338p pro...    46   4e-05
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.      41   0.001
AY058502-1|AAL13731.1|  280|Drosophila melanogaster LD21171p pro...    41   0.001
X07656-2|CAA30503.1|  982|Drosophila melanogaster protein ( Dros...    36   0.065
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran...    35   0.11 

>AY089271-1|AAL90009.1|  451|Drosophila melanogaster AT07338p
           protein.
          Length = 451

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = -1

Query: 251 IIDGFSKWPEVHILNSSTNSTIE--VLNKIFTAFV*PQILTSDNSTHFVSPKFFNYKKML 78
           ++D FSKW E+  +  +T  T+   V  +I   +  P+++ +DN+       F  + + L
Sbjct: 186 LVDRFSKWTEIVPMRRATTETMRKAVRERIVARYGVPKVMITDNNVQLTIRAFRKFLEEL 245

Query: 77  GINQRRSVPYKPARN--SQVERNVQTL 3
           G+  + + PY P  N   +  R V+T+
Sbjct: 246 GVRHQLTAPYTPQENPTERANRTVKTM 272


>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
          Length = 1003

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 263  LFSFIIDGFSKWPEVHILNSSTNSTI-EVLNKIFTAFV*PQILTSDNSTHFVSPKFFNYK 87
            L+   ID FSK+ ++  L S  +  + E L +    F  P++L SDN    + P   NY 
Sbjct: 776  LYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYL 835

Query: 86   KMLGINQRRSVPYKPARNSQVER 18
            + L I+   +   K   N QVER
Sbjct: 836  RSLDIDLYYAPTQKSEVNGQVER 858


>AY058502-1|AAL13731.1|  280|Drosophila melanogaster LD21171p
           protein.
          Length = 280

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 263 LFSFIIDGFSKWPEVHILNSSTNSTI-EVLNKIFTAFV*PQILTSDNSTHFVSPKFFNYK 87
           L+   ID FSK+ ++  L S  +  + E L +    F  P++L SDN    + P   NY 
Sbjct: 53  LYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYL 112

Query: 86  KMLGINQRRSVPYKPARNSQVER 18
           + L I+   +   K   N QVER
Sbjct: 113 RSLDIDLYYAPTQKSEVNGQVER 135


>X07656-2|CAA30503.1|  982|Drosophila melanogaster protein (
           Drosophila melanogasterretrotransposon 1731 sequence. ).
          Length = 982

 Score = 35.5 bits (78), Expect = 0.065
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -1

Query: 140 LTSDNSTHFVSPKFFNYKKMLGINQRRSVPYKPARNSQVERNVQTL 3
           + SDN   FV+  F +Y K  GI ++ ++P+ P +N   ER  +TL
Sbjct: 265 IRSDNGGEFVNNVFDDYLKAHGIARQLTIPHTPQQNGVAERANRTL 310


>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
            transcriptase-like polymeraseprotein.
          Length = 1059

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -1

Query: 248  IDGFSKWPEVHILNSSTNSTI-EVLNKIFTAFV*PQILTSDNSTHFVSPKF-FNYKKMLG 75
            ID FSK     ++ S     I + L  I   +  P+++  DN     S    F     LG
Sbjct: 839  IDKFSKLAMGRVIKSKAVEDIRKALRDIVFYYGVPKLIVMDNEKSLNSASIKFMLTDQLG 898

Query: 74   INQRRSVPYKPARNSQVERNVQTL 3
            I   ++ PYK   N Q+ER   TL
Sbjct: 899  IELYKAPPYKSTVNGQIERFHSTL 922


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,275,649
Number of Sequences: 53049
Number of extensions: 607908
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)