Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0172
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.21 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.28 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.49 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.0  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 263 LFSFIIDGFSKWPEVHILNSSTNSTIEVLNKIFTAF 156
           LFS I+ GF  +   H  +S     + +LN+++TAF
Sbjct: 413 LFSGIV-GFGAYCAAHTDSSGAMKIVNMLNQLYTAF 447


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 263 LFSFIIDGFSKWPEVHILNSSTNSTIEVLNKIFTAF 156
           LFS I+ GF  +   H  +S     + +LN+++TAF
Sbjct: 413 LFSGIV-GFGAYCAAHTDSSGAVKIVNMLNQLYTAF 447


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 PVPLIRQPSSKENLVWSYQN 583
           P+P++  P S  NLV+ Y N
Sbjct: 308 PLPMVDNPESTGNLVYIYNN 327


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 581 NVHYEKPSYH 610
           NVHY KPS H
Sbjct: 321 NVHYRKPSTH 330


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 247 IIKENKNSEIWQNLCALFQTFKRSF 321
           +++ N N++++Q  C L    KRSF
Sbjct: 65  LLQGNINNQLFQTPCELLNFPKRSF 89


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 GLSRVCFAATSVGEFRC 364
           GL RVC A +S  E+ C
Sbjct: 102 GLWRVCVAISSRMEYEC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,686
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)