Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0172
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50260.1 68416.m05496 AP2 domain-containing transcription fac...    28   6.4  
At5g51150.1 68418.m06342 expressed protein similar to unknown pr...    27   8.5  

>At3g50260.1 68416.m05496 AP2 domain-containing transcription
           factor, putative EREBP-3 homolog, Stylosanthes hamata,
           EMBL:U91982
          Length = 153

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 345 DVAAKHTRERPFKGLK 298
           DVA K  RERPFKG++
Sbjct: 10  DVAVKMKRERPFKGIR 25


>At5g51150.1 68418.m06342 expressed protein similar to unknown
           protein (gb|AAD46013.1)
          Length = 531

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 250 IKENKNSEIWQNLCALFQTFKRSFPCVF 333
           I  N NS + QN  A+  TFK++FP  F
Sbjct: 302 IHPNTNSCLAQNANAMSATFKKTFPLYF 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,397
Number of Sequences: 28952
Number of extensions: 286027
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)