Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0170
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   3.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.1  

>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 541 DCDSGPCRDDPPRATHLLNHLHPQLVRARV*SGKHASLADTGTDNPRV 684
           D D+G    D P  T L     P  V A      HAS +D+   NP +
Sbjct: 59  DEDNGDIEQDMPPVTRL-QPTSPMAVNAASDEASHASSSDSSDKNPDI 105


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
 Frame = +3

Query: 561 PRRPTPRYPSIEPFAPPISARQSL------------KRQTCVPGRYRN*QPESLMPVGHP 704
           P  P P +P+  PF+PP +A   +               T  PG      P+S  P+  P
Sbjct: 454 PSYPYPMFPA--PFSPPRNAMMPIPAPMDQFSTFHQSMATLPPGAVPTSIPQSYYPIYSP 511

Query: 705 TLNFHSSICMSFYIHCSPV 761
            +    S    +Y H  P+
Sbjct: 512 EMAMPQSYSPMYYTHNPPM 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,365
Number of Sequences: 5004
Number of extensions: 55609
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)