Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0170
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   4.2  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 398 FYWNEV-PYGNRRRGTLAGKK 339
           FYW+ V P GN+R+G   GKK
Sbjct: 11  FYWSAVIPKGNKRKGKCRGKK 31


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 497 FVKQVPFRGATVAKGIVTQVRAATTHPAL 583
           F+K+VPFRG   +    TQ+  AT +  L
Sbjct: 251 FIKKVPFRGVNCSDAAGTQIPYATVNDLL 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,146,827
Number of Sequences: 59808
Number of extensions: 416771
Number of successful extensions: 1010
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)