Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0170
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26180.1 68415.m03144 calmodulin-binding family protein low s...    30   1.9  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    29   3.4  
At2g14850.1 68415.m01687 expressed protein                             28   7.9  
At1g07180.1 68414.m00764 pyridine nucleotide-disulphide oxidored...    28   7.9  

>At2g26180.1 68415.m03144 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 416

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 692 WHETLGLSVPVSARDACLPLQTLARTNWGCKWFNRWVA 579
           W  T   ++  ++  + L  Q   + +WG  W  RW+A
Sbjct: 214 WRSTTSSNLKTNSSISYLKSQEFDKNSWGWSWLERWMA 251


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = -3

Query: 641 LPLQTLARTN---WGCKWFNRWVA 579
           LP QTL  TN   WG  W  RW+A
Sbjct: 276 LPHQTLMDTNTTDWGWSWLERWMA 299


>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 555 SVPRRPTPRYPSIEPFAPPISARQSLKRQTCVPGRYRN*QPESLMPVGHP 704
           SV + P PRYP    +  P+      K   C   ++R+ +P  L P+G P
Sbjct: 76  SVAKSPPPRYPKKSLYGDPVFPPSPRK---CRSRKFRD-RPSPLGPLGKP 121


>At1g07180.1 68414.m00764 pyridine nucleotide-disulphide
           oxidoreductase family protein contains similarity to
           alternative NADH-dehydrogenase GI:3718005 from [Yarrowia
           lipolytica], SP|P32340 Rotenone-insensitive
           NADH-ubiquinone oxidoreductase, mitochondrial precursor
           (EC 1.6.5.3) (Internal NADH dehydrogenase)
           {Saccharomyces cerevisiae} ; contains Pfam profile
           PF00070: Pyridine nucleotide-disulphide oxidoreductase
          Length = 510

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 256 LRSFTYRLRHYEVCQVSKLLIKILR 330
           L SF  RLRHY + Q++K  +K++R
Sbjct: 290 LSSFDDRLRHYAIKQLNKSGVKLVR 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,243
Number of Sequences: 28952
Number of extensions: 288969
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)