Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0169
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    37   0.002
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    34   0.017
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   4.4  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   7.7  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 306 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVM 416
           W P  L+QN    ++V    PWW +I+L T+ VR+ +
Sbjct: 65  WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLAL 101


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 312 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFHL*FYHRGTVHK*TIIYQK 476
           P  ++QN    LH+   +PWW +I    + +R+ +F +      T  K  II  K
Sbjct: 96  PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPK 150


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = -1

Query: 558 HHFLSISCSFNLISSLPACVIFICNNC-----ISGRLLFIC 451
           H F  ++C++ ++S L A +I++C         S R+LF+C
Sbjct: 136 HIFSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVC 176


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 558 HHFLSISCSFNLISSLPACVI 496
           H    IS  F LIS LP+CVI
Sbjct: 314 HQLQVISLIFTLISILPSCVI 334


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 325 TNPTGPQPPRPMLANVGSPFAAKDGLH*QHL 233
           T P GP+    ++  +GSP   K G    HL
Sbjct: 135 TVPVGPEDKAVVVQKIGSPLVKKTGSLKDHL 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,797
Number of Sequences: 5004
Number of extensions: 49856
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)