Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0169
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490...    35   0.039
03_02_0566 - 9490258-9490267,9490374-9491113                           29   2.0  
02_01_0108 - 789597-790224,790441-790570,790946-791081                 29   2.0  
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068...    29   3.4  
03_02_0342 - 7645323-7645909,7646323-7646491                           25   4.3  
06_03_0441 - 20820121-20820296,20820554-20820613,20820751-208208...    28   4.5  
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819     27   7.9  

>10_08_0659 +
           19647037-19647464,19647569-19647659,19648998-19649039,
           19649179-19649237,19649559-19649634,19649735-19649866,
           19650251-19650358,19651040-19651094,19651187-19651437
          Length = 413

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 312 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 407
           PV  +Q+  +Y+H    + WW  I L T+++R
Sbjct: 124 PVAALQHVIDYIHTFTGLNWWACIALATVLIR 155


>03_02_0566 - 9490258-9490267,9490374-9491113
          Length = 249

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 319 PTGPQPPRPMLANVGSPFAAKDGLH*QHLIS 227
           P  PQPP P  A  G+  A  D L  Q+L+S
Sbjct: 6   PPPPQPPSPSAATAGAAAAPVDALFLQNLMS 36


>02_01_0108 - 789597-790224,790441-790570,790946-791081
          Length = 297

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 317 NWSPTS*AYAGKRRFTIRSKRWTALTAS 234
           +W P S A AG+  ++I ++ W A TAS
Sbjct: 206 DWMPMSAAAAGQESYSISAQHWPASTAS 233


>06_03_1205 -
           28406183-28406218,28406462-28406548,28406769-28406830,
           28407968-28408184,28408793-28408957,28409145-28409250,
           28409830-28410071,28410493-28410605,28410848-28411043,
           28411681-28411827,28412034-28412218,28412478-28412592,
           28413237-28413728
          Length = 720

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 409 TLTT--IVPKTIAPHHGTSKVTCRYSKQFCTNP 317
           TLTT  ++ K I P HG S VT  +S Q C  P
Sbjct: 442 TLTTGKLMCKAIEPIHGHSDVTNDFSDQACCTP 474


>03_02_0342 - 7645323-7645909,7646323-7646491
          Length = 251

 Score = 25.4 bits (53), Expect(2) = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -3

Query: 361 SKVTCR---YSKQFCTNPTGPQPPRP 293
           S V C+   Y K+F   P  P PPRP
Sbjct: 156 SPVACKCGKYKKKFMFAPPPPPPPRP 181



 Score = 21.4 bits (43), Expect(2) = 4.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 319 PTGPQPPRPMLANVGSPFAAK 257
           P  P+PP P + +   PF  K
Sbjct: 205 PPAPKPPAPPVEDEPQPFFHK 225


>06_03_0441 -
           20820121-20820296,20820554-20820613,20820751-20820859,
           20820938-20821041,20821387-20822101,20822580-20822719,
           20823342-20823672
          Length = 544

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 531 FNLISSLPACVIFICNNCISGRLLFIC 451
           F+L+ +LP  V F   N I+G+ L IC
Sbjct: 437 FSLMKNLPKAVSFANRNLIAGKKLLIC 463


>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
          Length = 598

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 452 VHCSSVIKSQVEHNNSDNYCAQDNCT 375
           +HC+    SQ +HN+++  C  D  T
Sbjct: 330 LHCTQASSSQGDHNDAEKACFPDEAT 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,764
Number of Sequences: 37544
Number of extensions: 336320
Number of successful extensions: 975
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)