Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0169
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36969| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   4e-11
SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)                   31   0.66 
SB_22271| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.1  
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_36236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_7866| Best HMM Match : Trp_repressor (HMM E-Value=7.3)              27   8.1  

>SB_36969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/54 (55%), Positives = 37/54 (68%)
 Frame = +3

Query: 264 ANGEPTFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFHL 425
           A GEPT AS+GLGG  P+GLVQ+  E LH T+ +PW  +IV  TI  R +MF L
Sbjct: 193 AIGEPTLASMGLGGTTPIGLVQHALEMLHATVGLPWVWSIVAATIAFRTLMFPL 246



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +2

Query: 419 PLVILSQRNSAQMNNNLPEIQLLQMKM 499
           PL++ SQ N+A++NN  PE++ +Q ++
Sbjct: 245 PLIVKSQANAARLNNVKPELEEVQAQL 271


>SB_26079| Best HMM Match : DUF1534 (HMM E-Value=2.5)
          Length = 165

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 312 PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 407
           P+   Q   E +H    +PWW  I+  T+V+R
Sbjct: 44  PIYATQQVLEAIHTWTHLPWWATIIGVTVVLR 75


>SB_22271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 371 VGCNCLGHNSCQSCYVPLVILSQRNSAQM-NNNLPEIQ 481
           +GC C+G +  +SCYV L +L+  +   + +N LPEIQ
Sbjct: 1   MGC-CIGRSYKRSCYVQLPLLTPHSLLFIKSNTLPEIQ 37


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 374 GC-NCLGHNSCQSCYVPLVILSQRNSAQMNNNLP 472
           GC NC  +N+C  C  PL +LS    AQ     P
Sbjct: 387 GCINCPFNNNCTRCNPPLSLLSTGQRAQCVRTCP 420


>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 424 KWNITTLTTIVPKTIAPHHGTSKVTCRYSKQFCTNPTGPQPPRPMLANVGSP 269
           K ++ TL   VPK   PH G      + +++   NP  P+ P      +G P
Sbjct: 262 KESLATLKKSVPKPDDPHQGGDSTGNQGTQRTFGNPREPRGPSGTQRTLGDP 313


>SB_36236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 467 LPEIQLLQMKMTQAGRLEIKLKLHDMLRK 553
           L E   LQM  +Q  RL + + +HD+L K
Sbjct: 125 LHETLCLQMYTSQLARLRVNIYIHDLLNK 153


>SB_7866| Best HMM Match : Trp_repressor (HMM E-Value=7.3)
          Length = 154

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 467 LPEIQLLQMKMTQAGRLEIKLKLHDMLRK 553
           L E   LQM  +Q  RL + + +HD+L K
Sbjct: 63  LHETLCLQMYTSQLARLRVNIYIHDLLNK 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,365
Number of Sequences: 59808
Number of extensions: 403802
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)