Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0169
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical pr...    41   5e-04
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    29   3.1  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    28   4.1  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>Z81029-7|CAB02698.2|  366|Caenorhabditis elegans Hypothetical
           protein C01A2.3 protein.
          Length = 366

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 264 ANGEPTFASIGLGGWG-PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVM 416
           A+G      +GL  W  P    +   E +HV LD+PWW  IV  T+ +R ++
Sbjct: 70  ASGASVLEELGLWTWWKPSSYFRWALESIHVHLDIPWWVTIVAATVTLRALL 121


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +2

Query: 425 VILSQRNSAQMNNNLPEIQLLQMKMTQAGRLEIK 526
           ++L +  + + N NLP++ ++ +++ +AG + IK
Sbjct: 680 LLLGRSGTPKANGNLPKVMIIPLEIPKAGEVNIK 713


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 421 TCDFITEEQCTNEQ*STRNTVIADENDTSRQTGNQIEAARYAQEMMLFM 567
           + DF+  E+  N+Q    NTV+++   T R   N  +  R      LF+
Sbjct: 34  SADFLNNEELNNDQNDAENTVLSEGVSTLRINENMTKEDRACISAALFI 82


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 421 TCDFITEEQCTNEQ*STRNTVIADENDTSRQTGNQIEAARYAQEMMLFM 567
           + DF+  E+  N+Q    NTV+++   T R   N  +  R      LF+
Sbjct: 34  SADFLNNEELNNDQNDAENTVLSEGVSTLRINENMTKEDRACISAALFI 82


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 363 HLK*RADIRNSSAPIQLVPNLLGLCW 286
           HLK   D +   +PI L+PN++G  W
Sbjct: 159 HLKKYIDRQGRKSPIPLIPNIIGRNW 184


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 351 VTLDVPWWGAIVLGTIVVRVVMF 419
           V  DVP+WG  V  TIV+ V +F
Sbjct: 166 VEKDVPFWGFTVFLTIVIAVAIF 188


>Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical
           protein F02C12.1 protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 365 SMVGCN-CLGHNSCQSCYVPLVILSQRNSAQMNNNLPE 475
           SM  CN C  H+ C SCY   V+    +S +  +  PE
Sbjct: 35  SMFTCNLCENHHICASCYNDTVVEESIHSKKSQDLPPE 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,170
Number of Sequences: 27780
Number of extensions: 304893
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)