Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0169
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1...    36   0.019
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ...    30   1.2  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    30   1.2  
At5g62170.1 68418.m07804 expressed protein various predicted pro...    29   2.9  
At4g23440.1 68417.m03379 expressed protein                             29   2.9  
At2g46455.1 68415.m05781 cytochrome oxidase biogenesis protein-r...    29   2.9  
At4g35970.1 68417.m05117 L-ascorbate peroxidase, putative simila...    28   3.8  
At2g42060.1 68415.m05201 CHP-rich zinc finger protein, putative        28   3.8  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    28   5.0  
At3g63390.1 68416.m07136 expressed protein                             27   6.6  
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    27   6.6  
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro...    27   8.7  

>At5g62050.1 68418.m07788 OXA1 protein (OXA1) identical to AtOXA1
           [Arabidopsis thaliana] GI:6624207
          Length = 429

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 261 AANGEPTFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 407
           AA  E T A+     + P+  +Q C + +H      WW +IV+ TI++R
Sbjct: 118 AAVSEVTLAAAD--SFFPIAALQQCIDMVHTFTGFEWWASIVVATILIR 164


>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
           contains similarity to CHP-rich zinc finger protein
          Length = 305

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -1

Query: 543 ISCSFNLISSLPACVIFICNNCISGRLLFICALFLCDKITSGTXXXXXXLCPRQLH 376
           + C  + I  LP   +F CNN       F+C    C+KI   T       C +  H
Sbjct: 95  LDCDQHGICKLPVVPLFWCNNKSPSSDEFMCG--ACEKIVLSTNYFACLQCQKNFH 148


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -1

Query: 555 HFLSISCSFNLISSLPACVIFICNNCISGRLLFICALFLCDKITSGTXXXXXXLCPRQLH 376
           H++  S +  LI  LP   +F CNN       F C+   C     GT       C ++ H
Sbjct: 77  HYMLDSHNRGLICKLPVLPLFWCNNKEPNGADFCCS--ACKITNLGTAYYFCTTCRKKFH 134

Query: 375 PTMEHLK*RADIRNSSAPIQ 316
              E ++   +I++ S P Q
Sbjct: 135 --KECVESPLEIKHPSYPFQ 152


>At5g62170.1 68418.m07804 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 703

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 442 PL**NHKWNITTLTTIVPKTIAPHHGTSKVTCR 344
           PL  NH  N T++ TI  K   PHH +S +  R
Sbjct: 424 PLSINHLINFTSVPTIKKKDSQPHHKSSNLKLR 456


>At4g23440.1 68417.m03379 expressed protein 
          Length = 964

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 183 SGQHTRTTSSSRSYNDIRCC 242
           S  +T+T+S S SYN +RCC
Sbjct: 113 SSSYTQTSSVSVSYNRLRCC 132


>At2g46455.1 68415.m05781 cytochrome oxidase biogenesis
           protein-related contains weak similarity to
           Swiss-Prot:P39952 cytochrome oxidase biogenesis protein
           OXA1, mitochondrial precursor [Saccharomyces cerevisiae]
          Length = 129

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 306 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVM 416
           + P G VQ     +H      WW +IVL   +V V+M
Sbjct: 44  FSPEGFVQYVINGIHELTGFNWWMSIVLTAFLVTVLM 80


>At4g35970.1 68417.m05117 L-ascorbate peroxidase, putative similar
           to ascorbate peroxidase [Gossypium hirsutum]
           gi|1019946|gb|AAB52954; identical to putative ascorbate
           peroxidase APX5 (AT4g35970) mRNA, partial cds
           GI:31980501; contains Pfam domain PF00141: Peroxidase
          Length = 279

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 31  LNRPGRRSAVMKL-FCEKVEVRTPRIFY--VYSSAGSVRFASTLG 156
           LNRP  +     + FCE+V+ + PR+ Y  +Y  AG V    T G
Sbjct: 63  LNRPHNKGLEKAVAFCEEVKAKHPRVSYADLYQLAGVVAVEVTGG 107


>At2g42060.1 68415.m05201 CHP-rich zinc finger protein, putative 
          Length = 268

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 412 LCSTCDFITEEQCTN 456
           +CSTCDF   EQC N
Sbjct: 44  ICSTCDFNLHEQCGN 58


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 315 VGLVQNCFEYLHVTLDVPWWGAIVLGTIVV 404
           VG      EY +  L +PWWG ++  T+ +
Sbjct: 459 VGATIFACEYYNDQLQLPWWGVLLACTVAI 488


>At3g63390.1 68416.m07136 expressed protein
          Length = 175

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 458 SFVHCSSVIKSQVEHNNSDNYC--AQDNCTPPW 366
           +F  C ++IK Q E          A +NC PPW
Sbjct: 47  AFKRCETLIKDQCEEGAKIGCAVSASNNCKPPW 79


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -1

Query: 525 LISSLPACVIFICNNCISGRLLFICALFLCDKITSGTXXXXXXLCPRQLHPTMEHLK*RA 346
           LI  LP   +F CNN       F C+   C     GT       C ++ H   E ++   
Sbjct: 9   LICKLPVVPLFWCNNKEPNGADFCCS--ACKLTNLGTAYYFCATCRKKFH--KECVESPL 64

Query: 345 DIRNSSAPIQ 316
           +I++ S P Q
Sbjct: 65  EIKHPSYPFQ 74


>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 741

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 315 VGLVQNCFEYLHVTLDVPWWGAIVLGTIVV 404
           + L+     Y + T+ +PWWG ++   I V
Sbjct: 430 IALIMFISFYYNATVQLPWWGVLLACAIAV 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,918
Number of Sequences: 28952
Number of extensions: 266732
Number of successful extensions: 794
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)