Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0166
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.81
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.3
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 4.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.7
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 25 7.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 10.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 10.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 10.0
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 10.0
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.81
Identities = 27/92 (29%), Positives = 35/92 (38%)
Frame = -3
Query: 366 NLFSSSHISLGRSSPTSSLKYFXMASASCSQKSLGMLTACSCRQRLGFPYSEHRLSVCTP 187
N FSS+ I G + TSS Y +KS LT RQ +
Sbjct: 170 NSFSSNDIDDGFQTVTSSRSYG-------KKKSTEPLTKRQ-RQNQQKKLRAKEMQELAD 221
Query: 186 VESRRGRAPHRSDVRSSLRPESSRRNRARGTY 91
E RR A HR ++ + RP N +R Y
Sbjct: 222 EEQRRRLAAHRKELHEANRPRGGLNNSSRSAY 253
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 211 APALGMYPSGVSAWQGSPSQRRKIQ 137
APAL M PS + WQ P+Q+ +Q
Sbjct: 450 APALSMNPSSLPPWQ-QPTQQSAVQ 473
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 357 SSSHI--SLGRSSPTSSLKYFXMASASCSQK 271
SSSH S G S PTSSLK F +A ++K
Sbjct: 370 SSSHTIPSAGASIPTSSLKSFFEHAAEAARK 400
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 106 GQRNLPCSSLRNQLTWKILGILRPGCGIDSQCF 8
GQR L C+ ++ +LGI P CG + F
Sbjct: 257 GQRQLRCTGAAVKIASDLLGIAFPKCGSRIELF 289
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 230 KRCRHEQAVSIPKDFWLQEADAIXKYFKEEVGED 331
+R V P D Q++D++ KEE+G+D
Sbjct: 4 RRSTRRALVETPSDLNAQDSDSLSVSTKEELGDD 37
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 162 EPCHAETPLGYIPRAGALNTEN 227
+PC A++ GYIP G + EN
Sbjct: 51 QPCDAQSTGGYIPGKGIVLCEN 72
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 170 PRRDSTGVHTESRCSEYGKPKRCRHE 247
P+R STG+H S + + P R H+
Sbjct: 264 PKRQSTGLHRRSLTNYFKFPHRNAHQ 289
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 439 CGASFPYSTPPFRSVFDILVS 501
CG+ FP+ PF ++ D ++S
Sbjct: 815 CGSVFPFVVDPFTTILDDVLS 835
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 181 VSAWQGSPSQRRKIQSKTRE 122
VSA+ G P++R KI+SK ++
Sbjct: 1446 VSAYVGPPAERAKIRSKMKK 1465
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 240 RQRLGFPYSEHRLSVCTPVESRRGR 166
R R GFP E LS+ S RGR
Sbjct: 81 RGRYGFPTGEKMLSLYKATSSERGR 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,837
Number of Sequences: 5004
Number of extensions: 55320
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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