Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0166
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0085 - 20638769-20639150,20640054-20640286                       30   1.5  
04_04_0680 - 27217563-27220088                                         29   3.4  
03_06_0333 - 33204345-33204803                                         29   3.4  
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    29   3.4  
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    29   4.5  
09_02_0411 + 8721855-8722232                                           28   5.9  
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140...    28   7.8  
01_01_0955 - 7494486-7496327                                           28   7.8  

>03_05_0085 - 20638769-20639150,20640054-20640286
          Length = 204

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 187 SGVSAWQGSPSQRRKIQSKTREFSPKPGQRNLPCSSL 77
           +G  +W GS   RRK+       SP P +R+L   SL
Sbjct: 46  AGGGSWSGSDRWRRKVPVTAGPASPSPARRSLRLKSL 82


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +1

Query: 10  STGCRCRSRDARCPRSSMSTGSVKTNRVSSSGPVSARTLGS*TGSYVAAMGS 165
           S+G R   +  RC RS+ + GS     V   GP  A   G    S VAA GS
Sbjct: 70  SSGGRGDPQSRRCTRSASAKGSGDARSVEEGGPRVAGDDGGSGKSGVAAEGS 121


>03_06_0333 - 33204345-33204803
          Length = 152

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 22  RCRSRDARCPRSSMSTGSVKTNRVSSSGPVSARTLGS*TGSYVAAMGSPATPR 180
           R + R AR PR + S  +    R   S P +A      T +  AA  SPA+PR
Sbjct: 82  RAQHRGAR-PRWAASPPAATQRRRRHSRPAAALAFSRVTAAAAAASSSPASPR 133


>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +2

Query: 185 TGVHTESRCSEYGKPKRCRHEQAVSIPKDFWLQEADAIXKYFKEEVGEDLPNEMWDE 355
           TG H+E  C  +      R    + +P D    + D + K+ K++ G   P    D+
Sbjct: 155 TGTHSEWACCSFSTNNPSRRGGPIKVPDDV---KNDFVRKWLKQQEGNKYPKRNLDD 208


>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 173 RRDSTGVHTESRCSEYGKPKRCRHEQAVSIPKDFWLQEADAIXKYFKEEVGE 328
           RR ++      RCS   +P+RCR      + ++  L  AD       E+VGE
Sbjct: 2   RRTTSDDEALPRCSPPPRPRRCRARPPPPVGEEAALAVADGDGAALGEDVGE 53


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 310 QRGGRRRSTQRNVGRTEQVEEQHTRP 387
           ++GGRRR +    GR  + EE+  RP
Sbjct: 81  EKGGRRRESTGGGGRRREAEEKRIRP 106


>03_05_0284 -
           22712390-22712899,22712978-22713304,22713742-22714091,
           22714176-22714401,22714655-22714728,22715813-22716152
          Length = 608

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 320 VGEDLPNEMWDELNKL 367
           VG +LP+++WD LN L
Sbjct: 544 VGNELPDDLWDNLNSL 559


>01_01_0955 - 7494486-7496327
          Length = 613

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -2

Query: 241 STALRFSVFRAPALGMYPSGVSAWQGSPSQRRKIQSKTREFSPKPGQRNLPCSSLRNQLT 62
           STA +F + +AP L   P    + Q    Q+   Q + +  +P+    +   SS    LT
Sbjct: 353 STATQFQLQKAPPLQKLPQLQKSHQLVKPQQLVSQQQLQPQAPRQIDFSAGTSSKPGVLT 412

Query: 61  WKILGILRPGCGIDSQC 11
            K  GI   G  +D  C
Sbjct: 413 KKPAGIDGDGAEVDGLC 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,176
Number of Sequences: 37544
Number of extensions: 410011
Number of successful extensions: 1423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)