Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0166
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      102   2e-22
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       99   4e-21
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        57   1e-08
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)         28   6.0  
SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_41863| Best HMM Match : Sushi (HMM E-Value=3.2e-34)                 28   7.9  
SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35)                  28   7.9  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  102 bits (245), Expect = 2e-22
 Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = +3

Query: 3   YLKHWLSMPQ-PGRKMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAE 179
           YL+HWL++ + P +K+P IFHVNWFR D+   FLWPGFGENSRVL+W+ RR  GE     
Sbjct: 479 YLEHWLNLSKDPKKKLPLIFHVNWFRLDKNEHFLWPGFGENSRVLEWVFRRVHGEEIADP 538

Query: 180 TPLGYIPRAGALNTENL 230
           +P+G +P+ G+LN + L
Sbjct: 539 SPVGLLPKYGSLNLDGL 555



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 257 SIPKDFWLQEADAIXKYFKEEVGEDLPNEMWDELNKLRNNIQ 382
           SIPKD+WL+E   + KYF +EVG DLP  + DELN L N ++
Sbjct: 569 SIPKDYWLEELTELRKYFTDEVGIDLPKAIEDELNALENRLK 610


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = +3

Query: 3   YLKHWLSMPQ-PGRKMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAE 179
           YL+HWLSM + P +K+P IFHVNWFR D    FLWPGFGENSRVL+W+  R         
Sbjct: 358 YLEHWLSMEKDPKKKLPLIFHVNWFRLDNTEHFLWPGFGENSRVLEWVFNRVHNVDNADV 417

Query: 180 TPLGYIPRAGALNTENL 230
           +P+G IP+ GALN E +
Sbjct: 418 SPVGLIPKQGALNLEQM 434



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 19/46 (41%), Positives = 34/46 (73%)
 Frame = +2

Query: 245 EQAVSIPKDFWLQEADAIXKYFKEEVGEDLPNEMWDELNKLRNNIQ 382
           ++  SIPK++WL E +++ KYF++E+G+DLP  + +EL+ L   I+
Sbjct: 444 KELFSIPKEYWLDEVESLRKYFQQEIGDDLPKAISNELDALEQRIK 489


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
 Frame = +3

Query: 3   YLKHWLSMPQ----PGRKMPKIFHVNWFRKDEQGKFLWP 107
           YL+HWLSM      P  K+P IFHVNWFR +E+G FLWP
Sbjct: 668 YLEHWLSMADKTKHPNYKLPDIFHVNWFRVNEKGHFLWP 706


>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 206 RCSEYGKPKRCRHEQAVSI 262
           +CSEYG P+ C  E+A  +
Sbjct: 196 QCSEYGNPRECEEERAAMV 214


>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 155 RWGALPRRDSTGVHTESRCSEYGKPKRCRHEQAVSIPKDFW 277
           RWGA  R    GV+T S     G  ++ + E A ++ K  W
Sbjct: 56  RWGANTRNHHAGVYTGSDKYNPGVLQKHKFEDATTVDKRSW 96


>SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 150 DVRSSLRPESSRRNRARGTYPVRLYG 73
           D+R+ L P ++R  + RGT  VRL+G
Sbjct: 37  DLRAGLDPRAARDFKLRGTASVRLHG 62


>SB_41863| Best HMM Match : Sushi (HMM E-Value=3.2e-34)
          Length = 174

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 183 ESRRGRAPHRSDVRSSLRPESSRRNRARGTY 91
           + R G AP+R  +  S+RP S  R+  R TY
Sbjct: 114 QCRVGNAPNRGSIEGSVRPWSYVRHADRVTY 144


>SB_11065| Best HMM Match : WD40 (HMM E-Value=1.7e-35)
          Length = 702

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  GRKMPKIFHVNWFRKDEQGKFLWPG 110
           G     I H+NW  K+EQ K +W G
Sbjct: 337 GAPCDSIVHLNWAVKNEQRKAIWLG 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,183,769
Number of Sequences: 59808
Number of extensions: 448523
Number of successful extensions: 1515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)