Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0166
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   YLKHWLSMPQPGRKMPKIFHVNWFRKDEQGKFLWPG--FGE 119
           YL H  +    GR   K      FR D    +L PG  FGE
Sbjct: 434 YLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSFGE 474


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 72  FRKDEQGKFLWPGFGE 119
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 72  FRKDEQGKFLWPGFGE 119
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 430 PHCCGASFPYSTPPFRSVFDILV 498
           P+CCG      + P RS++  L+
Sbjct: 364 PNCCGKWSSQKSEPRRSIYSSLL 386


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 576 LNGDLEVDPRQVEGRSAEGQKGNNV 502
           LNG+ EV+P   E R    QK   V
Sbjct: 418 LNGEFEVEPAHGEDREEALQKAGIV 442


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 664 YMYMIFKNLNTNYSEYKVSSHF 599
           Y Y  + N N NY+ Y    ++
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYY 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 664 YMYMIFKNLNTNYSEY 617
           Y Y  + N N NY+ Y
Sbjct: 322 YKYSNYNNYNNNYNNY 337


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 70  QLTWKILGILRPGCGIDSQCF 8
           ++ W   GI R  C ID + F
Sbjct: 118 EVVWLSHGIFRSSCDIDVEFF 138


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 357 SSSHISLGRSSPTSSLKYFXMASASCSQKS 268
           SS ++ +G +SP SS +Y   A+ S +  S
Sbjct: 813 SSDYLMVG-NSPASSPRYLSAAATSSTSTS 841


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,785
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)