Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0166
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38210.1 68418.m04606 serine/threonine protein kinase family ...    33   0.23 
At5g29090.1 68418.m03619 hypothetical protein                          33   0.23 
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati...    29   3.8  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    28   5.0  
At4g02410.1 68417.m00326 lectin protein kinase family protein co...    28   6.6  
At4g00450.1 68417.m00062 expressed protein                             28   6.6  
At3g55550.1 68416.m06168 lectin protein kinase, putative similar...    28   6.6  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    27   8.7  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    27   8.7  
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)...    27   8.7  

>At5g38210.1 68418.m04606 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 686

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 93  KFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAGALNTENLSAV 239
           KF+ P  G  S   D +     G   +   P+GY P  GALN  NL +V
Sbjct: 149 KFICPNKGVGSIHQDDLYHNHCGGIFNITVPIGYAPEEGALNVTNLESV 197


>At5g29090.1 68418.m03619 hypothetical protein 
          Length = 195

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 102 WPGFGENSRVLDWILRRCDGEPCHA--ETPLGYIPRAG 209
           W G+  N RVLD +  RCDG+  H   E+  G I R G
Sbjct: 54  WSGWASNVRVLDGVAGRCDGQNGHVLNESIGGPIGRGG 91


>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 579

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +3

Query: 30  QPGRKMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAG 209
           QP R +  +F++   R+   G F  P  G  S V +   R+   +      P  Y+P   
Sbjct: 128 QPYRNLT-VFYMCDPRRHFFGNFTCPVKGLGSVVQNSTYRKLCDKSFSVTVPTSYVPEEE 186

Query: 210 ALNTENLSAVDMNKLSAYLK 269
           ALN  +L +V    L   LK
Sbjct: 187 ALNLTHLESVLRKGLEVKLK 206


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
 Frame = +2

Query: 95  VPLARFRR-ELSGLRLDLTSLRWGALPRRDSTGVHTESRCSEYGKPKRCRH---EQAVS- 259
           V L   RR ELS    D+ S RW  L + D   +  + R        RCR    + A+S 
Sbjct: 225 VVLPELRRCELSDFDRDVWSGRWIRLGKNDECEISNDGRYRCLPDGYRCREPWCDGALSA 284

Query: 260 IPKDFWLQEADAIXKYFKEEVGEDLPNEMW 349
           +  + W+  +    K F  E   D     W
Sbjct: 285 LESNGWVYSSHCSFKLFSSESAWDCLKNKW 314


>At4g02410.1 68417.m00326 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain and PF00138: Legume
           lectins alpha domain
          Length = 674

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 395 LKLGLVCCSSTCSVRPTFRWV 333
           LKLGL+C  S   VRPT R V
Sbjct: 602 LKLGLLCSHSDPQVRPTMRQV 622


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 166  GSPSQRRKIQSKTREFSPKPGQRNLPCS-SLRNQLTWKILGIL 41
            GSPS  R+  + T + SP P    L  S SLR Q   ++L ++
Sbjct: 1845 GSPSLARRSSANTTDTSPPPSPAALRASMSLRLQFLLRLLPVI 1887


>At3g55550.1 68416.m06168 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 684

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 395 LKLGLVCCSSTCSVRPTFRWVDLRL 321
           +KLGL+C +++  VRPT R V + L
Sbjct: 593 IKLGLLCSNNSPEVRPTMRQVVMYL 617


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 310 EVLXDGVSLLQPKVFRYADSLFMSTALRFSVFRAPALGMYPSGV--SAWQGSPSQRRKIQ 137
           E L + VSLL PK +   D     T  +F V ++ +       +  S W  +P+  +K+ 
Sbjct: 233 EKLSEDVSLLDPKDYNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSSTPNGNKKLD 292

Query: 136 SKTREFSPK 110
           +   E   K
Sbjct: 293 ASYNEAKQK 301


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 310 EVLXDGVSLLQPKVFRYADSLFMSTALRFSVFRAPALGMYPSGV--SAWQGSPSQRRKIQ 137
           E L + VSLL PK +   D     T  +F V ++ +       +  S W  +P+  +K+ 
Sbjct: 235 EKLSEDVSLLDPKDYNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSSTPNGNKKLD 294

Query: 136 SKTREFSPK 110
           +   E   K
Sbjct: 295 ASYNEAKQK 303


>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
           family protein contains Pfam profile PF05743: Tumour
           susceptibility gene 101 protein (TSG101); similar to
           Tumor susceptibility gene 101 protein
           (Swiss-Prot:Q99816) [Homo sapiens]
          Length = 398

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 307 LQRGGRRRSTQRNVGRTEQVEEQHT 381
           LQ G +RR  + N+G  E VEE+ T
Sbjct: 256 LQAGLKRREDELNIGLKEMVEEKET 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,792
Number of Sequences: 28952
Number of extensions: 314718
Number of successful extensions: 1071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)