Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   2.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   3.1  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   3.1  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    26   3.1  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   4.1  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   4.1  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   4.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.1  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   9.4  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    24   9.4  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    24   9.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   9.4  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 237
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 267 VLKVGESRHVRLDIEFPDAPVTFTLVQGSG 356
           V+ +    HVR++  F +  ++  LV+G+G
Sbjct: 578 VMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 96  IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 224
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 273 SILRLVVYCFL**HGFHLY-HI*FI 202
           S+L L +YC L   GFHL  H+ F+
Sbjct: 218 SLLNLTIYCILCYPGFHLISHLNFV 242


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 373 PIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTAT 260
           P + +   P +RVNVT ASG+     T       N +T
Sbjct: 240 PTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNAST 277


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 ELVAAWVFCFCLWIP 118
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 ELVAAWVFCFCLWIP 118
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 441 SNISSSFPPYLQILQAEHQGDGVQLSVLAPNP 346
           +N+S   PP ++   A   G G+ LS++   P
Sbjct: 125 NNVSDVVPPVIKKALASSHGGGMSLSIVLLEP 156


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 MGSRGKSRIPTQQQARHSS-SIVRSRCQTR*IKCDTGGSHVTTRSSKLPV 263
           + S  + R P+   +  S+ S ++SR   R  K    GSH   RSSK P+
Sbjct: 111 VASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSVREGSHRPGRSSKEPL 160


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 306 IEFPDAPVTFTLVQGSGP 359
           IEFPD P TF  ++ + P
Sbjct: 37  IEFPDGPATFVRLKCTNP 54


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 325 GASGNSMSRRTCLDSPTFNTATG 257
           G S  SMS  T +DS  FN A+G
Sbjct: 435 GLSKPSMSSDTMIDSRLFNQASG 457


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 HGFHLYHI*FIWFGIW 187
           H FHLYH  + W G W
Sbjct: 520 HSFHLYHWWWTW-GAW 534


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 420 PPYLQILQAEHQGDGVQLSVLAPNPEQE*MXQAHLGIQ 307
           PP LQ+ +   Q D  + S   P+P  E M +++  I+
Sbjct: 626 PPTLQVDRTPQQPDPQETSESLPSPNTEEMGESYNDIR 663


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 239 SDMASTCITFNSSGLASGPNN 177
           +++  T  +F SSGL SGP N
Sbjct: 569 NNVLKTNSSFKSSGLTSGPRN 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,094
Number of Sequences: 5004
Number of extensions: 33939
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)