Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0649 + 19589807-19591024                                         31   0.32 
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    29   2.3  
10_08_1055 + 22587122-22587501,22587578-22588097                       27   7.0  
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461...    27   7.0  

>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 341 CSGFGASTLNWTPSPWCSA*RI*RYG 418
           C+G+GA+  +W P PW    R  R+G
Sbjct: 31  CAGWGAAAASWRPRPWFVGSRTDRFG 56


>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 349 P*TRVNVTGASGNSMSRRTCLDSPTFNTATG 257
           P T  + T A   S S + C DSPT +T++G
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSG 34


>10_08_1055 + 22587122-22587501,22587578-22588097
          Length = 299

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 420 PPYLQILQAEHQGDGVQLSVLAPNPEQE*MXQAHLGIQCPDVHALI 283
           PPY+ +L     G   QL+ ++ + EQ+          C  +HAL+
Sbjct: 37  PPYVHLLGGGGGGGEDQLAAVSQHAEQQQQSMVDASAACDLLHALL 82


>02_01_0616 +
           4616936-4617307,4618723-4618809,4619322-4619384,
           4619478-4619537,4619570-4619602,4621584-4621751
          Length = 260

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 341 CSGFGASTLNWTPSPWCSA 397
           CS  GA    WTP  WCS+
Sbjct: 16  CSLRGADLAGWTPPWWCSS 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,892
Number of Sequences: 37544
Number of extensions: 240478
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)