Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         33   0.14 
SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)                     30   0.77 
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)                   29   1.3  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  29   1.8  
SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)                      29   1.8  
SB_22863| Best HMM Match : Integrase_Zn (HMM E-Value=0.79)             28   3.1  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   4.1  
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_49359| Best HMM Match : rve (HMM E-Value=5.5e-37)                   27   9.5  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 70  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 237
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 238 LQ 243
            +
Sbjct: 65  FK 66


>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
          Length = 423

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 447 FSSNISSSFPPYLQILQAEHQGDGVQ 370
           F   + +S+  YLQIL+A  QG GVQ
Sbjct: 245 FEEGVLTSYQRYLQILEASAQGKGVQ 270


>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 263 DW*FTASCS-DMASTCITFNSSGLASGPNNA*RMTSLLLRG 144
           DW F    + D+   CI+ + + + +GP +  R TS L+RG
Sbjct: 151 DWAFNPHTNQDLVMICISIDDTNIENGPVDWDRFTSTLVRG 191


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 154 NKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVNY 258
           NKLV+ Q LLG  AK + + +++ E   L+  +++
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLKGHIHH 338


>SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)
          Length = 233

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 183 RSRCQTR*IKCDTGGSHVTTRSSKLPVAVLK 275
           +S+ QTR  K  T  S + TR SKL +A+ K
Sbjct: 22  KSKVQTRKCKVKTSESKIQTRKSKLQLAIAK 52


>SB_22863| Best HMM Match : Integrase_Zn (HMM E-Value=0.79)
          Length = 135

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 55  IIMTDEFFYGVTLSSSH-QSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 231
           II+  E   G+  + S  +S+ W P+  A+  +  K      L+GP  KP+ L +I V +
Sbjct: 67  IILAHEGHQGMVRTKSRLRSKLWWPQMDAQAEQFIKACYPCQLVGPRGKPEPL-LIMVSS 125

Query: 232 MSLQEAVNYQ 261
           + L+E  +Y+
Sbjct: 126 L-LREKHSYR 134


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 175
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 216 DTGGSHVTTRSSKLPVAVLKVGESRHVRL---DIEFPDAPVTFTLVQGS 353
           +T   HVT RSS  P  ++     R +RL   D E  D  +  TL + S
Sbjct: 535 ETSTDHVTRRSSASPEKIVSKTRDRKIRLVIIDYESTDVDLQATLKRSS 583


>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 113 RHGIQRQKQNTHAATSSSFVKHC 181
           + G+ RQ +NT+ AT SS VK C
Sbjct: 389 KSGLARQLRNTNDATESSEVKTC 411


>SB_49359| Best HMM Match : rve (HMM E-Value=5.5e-37)
          Length = 971

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 55  IIMTDEFFYGVTLSSSH-QSETWDPEAKAEYPRSNKLVIRQALLGPDAKPD 204
           II+  E   G+  + S  QS+ W P+  A+  +  K      L+GP  KP+
Sbjct: 650 IILAHEGHQGMVRTKSRLQSKLWWPQMDAQAEQFIKACYPCQLVGPRGKPE 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,175
Number of Sequences: 59808
Number of extensions: 263262
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)