Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   0.89 
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   4.8  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   4.8  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   6.3  
M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein ( C.ele...    27   6.3  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    27   6.3  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    27   8.3  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    27   8.3  

>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 121 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 243
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 50  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 166
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 50  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 166
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 359 WPRTLNKSKCXRRIWEFNVQTYMP*FTNFQYCDW*FTASCSDMASTCITFNSSGLAS 189
           W +++N  KC RR +  +VQT  P   + Q      T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--PVCKDCQQ-----TLEQDKMSSTVLNYNITGTSS 258


>M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein (
           C.elegans vitellogenin6 gene ancoding yolk protein
           VIT180. ).
          Length = 259

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 359 WPRTLNKSKCXRRIWEFNVQTYMP*FTNFQYCDW*FTASCSDMASTCITFNSSGLAS 189
           W +++N  KC RR +  +VQT  P   + Q      T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--PVCKDCQQ-----TLEQDKMSSTVLNYNITGTSS 258


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 388 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMS 302
           PR+   +  +GP+P   +NV G S GN+MS
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS 771


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 359 WPRTLNKSKCXRRIWEFNVQTYMP*FTNFQYCDW*FTASCSDMASTCITFNSSGLAS 189
           W +++N  KC RR +  +VQT  P   + Q      T     M+ST + +N +G +S
Sbjct: 209 WAKSINFDKCTRRPYIHHVQT--PVCKDCQQ-----TLEQDKMSSTVLNYNITGTSS 258


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 359 WPRTLNKSKCXRRIWEFNVQTYMP*FTNFQYCDW*FTASCSDMASTCITFNSSGLAS 189
           W +++N  KC RR +  +VQT  P   + Q      T     M+ST + +N +G +S
Sbjct: 209 WAKSINFDKCTRRPYIHHVQT--PVCKDCQQ-----TLEQDKMSSTVLNYNITGTSS 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,045,144
Number of Sequences: 27780
Number of extensions: 200650
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)