Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 61  MTDEFFYGVTLSSSHQSETW 120
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 58  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV 165
           + TD      ++SSS +++ W P+   E    N L+
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 54  NHHDGRVFLWCHPFIITS 107
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 162 RHSSSIVRSRCQTR*IKCDTGG 227
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
 Frame = +3

Query: 72  VFLWCHPFIITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTGGSHVTTRSS 251
           VF     F++  V D+ S+ +  + T   +RH S        TR I  + G S     S+
Sbjct: 273 VFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYS--------TRAIVIEKGQSIWDYDST 324

Query: 252 KLPVAVLKVGESRHVR----LDIEFP 317
            +P    K   S+H+     LD E+P
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPEYP 350


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 209 NSSGLASGPNNA*RMTSLLLRGYSAFASGS 120
           N  G  + PN+A R     + G  A  SGS
Sbjct: 576 NDEGGKTSPNSAVRKCMSPINGSGASGSGS 605


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +2

Query: 77  SMVSPFHHHISQRHGIQRQKQNTHAATSSSF 169
           +M  P HHH  Q   +Q          S S+
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHYRQPPTLSESY 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,604
Number of Sequences: 438
Number of extensions: 2434
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)