Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0165
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9S...    33   0.089
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea...    29   1.9  
At3g58050.1 68416.m06471 expressed protein                             28   2.5  

>At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9SA23
           Syntaxin 51 (AtSYP51) {Arabidopsis thaliana}; supporting
           cDNA gi|13811643|gb|AF355755.1|AF355755
          Length = 232

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +1

Query: 169 RQALLGPDAKPDELNVIQVEAMSLQEAVNYQSQY*KLVNQGM 294
           R +LLGPD KPD+ ++ +V  M  Q  V YQ Q  +  ++G+
Sbjct: 106 RDSLLGPDIKPDD-SMSRVTGMDNQGIVGYQRQVMREQDEGL 146


>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P35579 myosin heavy chain,
           nonmuscle type A (Cellular myosin heavy chain, type A,
           Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
          Length = 629

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 54  NHHDGRVF-LWCHPFIITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTGG- 227
           N  DGR+  +W   +I   + D  SRG S + T+     +    R + +   IK +    
Sbjct: 470 NEKDGRLKNMWKKSYINRWI-DPSSRGGSHLNTEADYASNIEYSRMKVEYAAIKENLESM 528

Query: 228 SHVTTRSSKLPVAVLKVGE 284
            H+TT   +L +A+LKV E
Sbjct: 529 GHLTTSIRRLRLALLKVKE 547


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 88  TLSSSHQSETWDPEAKAEYPRSN 156
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,618
Number of Sequences: 28952
Number of extensions: 188325
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)