Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0164
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    29   0.45 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   4.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   5.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.6  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   7.3  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 28.7 bits (61), Expect = 0.45
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 25  AEKSVLKKKNRKGKIYNNSLFLEFCDLDHSYKDI 126
           A+K+ L ++  +GK Y+N+   +F DL   YKD+
Sbjct: 683 ADKTGLCEQTWRGKDYSNARVHDFFDLTEPYKDM 716


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 119 KTLTVSFFCLCC 154
           ++L VSF+CLCC
Sbjct: 480 QSLEVSFYCLCC 491


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  IQNFPAEKSVLKKKN-RKGKIYNNSLFLEFCDLDHSYKDI 126
           + N   ++  L+K+N  + ++ N S FL FC L H Y ++
Sbjct: 70  VLNRHVQQMHLQKQNLSERRMLNASCFLGFCVLAHDYVNL 109


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 118  YKSDLDHKILKIRNY-YRFCLCGFFFLKHFFLLESFES 8
            YK +++HKI+  +NY   F  C  F   +F LL+   S
Sbjct: 1180 YKLNVEHKIITYQNYEMTFNDCDAFSEFNFSLLKDITS 1217


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 282 FLELRSLSALSILFYDLALLDKRYSQFNL 368
           ++ L    ++S+ + D+ALLDK+  + N+
Sbjct: 22  YVNLSGAGSISVKYEDVALLDKQNKESNV 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,572
Number of Sequences: 5004
Number of extensions: 19819
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)