Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0164
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)                 29   1.8  
SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_39317| Best HMM Match : Protamine_P2 (HMM E-Value=3.4)              27   5.6  
SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)
          Length = 149

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 46  KKNRKGKIYNNSLFLEFCDLDHS 114
           KK  KG  YN+ +F+ FCDL  S
Sbjct: 36  KKTAKGAQYNSRVFVAFCDLCRS 58


>SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 KLHKLNWEYLLSNKAKS*NKMLNALNERSSKK 281
           +L K+   YLL NKA+  N+ LN+L  +   +
Sbjct: 59  RLVKIFHRYLLRNKARKTNRKLNSLTNKQDSR 90


>SB_39317| Best HMM Match : Protamine_P2 (HMM E-Value=3.4)
          Length = 269

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 KLHKLNWEYLLSNKAKS*NKMLNALNERSSKK 281
           +L K+   YLL NKA+  N+ LN+L  +   +
Sbjct: 92  RLVKIFHRYLLRNKARKTNRKLNSLTNKQDSR 123


>SB_42716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 354 NTSYPIKLSHKTKCSMHSTSE 292
           N  Y   L HK KCS H T +
Sbjct: 212 NIEYKRSLKHKNKCSFHQTDK 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,966
Number of Sequences: 59808
Number of extensions: 122994
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)