Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1SY56 Cluster: Cytochrome oxidase assembly precursor; ...    32   7.3  
UniRef50_Q4G3B7 Cluster: Hypothetical chloroplast RF55; n=1; Emi...    32   7.3  

>UniRef50_A1SY56 Cluster: Cytochrome oxidase assembly precursor;
           n=1; Psychromonas ingrahamii 37|Rep: Cytochrome oxidase
           assembly precursor - Psychromonas ingrahamii (strain 37)
          Length = 375

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 358 LMIKTILFVNIMHMYHRSNIFSINLYNHTFLCCFHSMFLAHLQIALGKW 212
           L + T+ ++ ++     +N F++    H +L C  ++F+  +QIALG W
Sbjct: 174 LSLSTLFYLRLISNPSDTNDFAVQ---HAYLWCLSALFVLLIQIALGGW 219


>UniRef50_Q4G3B7 Cluster: Hypothetical chloroplast RF55; n=1;
           Emiliania huxleyi|Rep: Hypothetical chloroplast RF55 -
           Emiliania huxleyi
          Length = 318

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 272 IFVLLSFYVFSTSPNSTGKMEFLVLNSVACFIVNF*ELHHIIHIR 138
           +FV+ +  ++S S  +    E L LNSVA F+VN+ EL   I  R
Sbjct: 237 LFVIRTDGIYSRSIYANRMNELLELNSVALFVVNYIELQDFIVAR 281


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,390,832
Number of Sequences: 1657284
Number of extensions: 8128329
Number of successful extensions: 19941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19930
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)