Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.1  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.5  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    25   9.5  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    25   9.5  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 9   DGAINNDDQDQIVEQLLSEYDEIIMPL 89
           DG +N  +   I+E+L  +YDE+  P+
Sbjct: 221 DGVVNEPNSSVIIEELDDDYDELNDPM 247


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 410  TKNKRLIKKLYEYLNNIQK**KVQQHLSIKC 502
            TKNK L  K+ E LNNI+   K  ++   KC
Sbjct: 1110 TKNKELEAKVKECLNNIKSLTKELENKEEKC 1140


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 329 YYAHVPQIQYIFYKFVQSYI-FVLLSFYVFSTSPNSTGKMEFLVLNSVACFIVNF*ELHH 153
           +Y HV +    F + VQS I +++  FY + +S  S+  +  L+ N+++   +   +L+H
Sbjct: 110 WYKHVSE-DPSFIREVQSTIEYIMRQFYAYVSSQESSHIIYELLKNAISTTTLVLSDLNH 168


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 404 KDTKNKRLIKKLYEYLNNIQK**KVQQ 484
           KDT+   L+K+  +YL N+ +  ++QQ
Sbjct: 790 KDTRITHLLKQTDQYLENLTRAVRIQQ 816


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 395 ELKKDTKNKRLIKKL 439
           +LKK  KNK+L+KKL
Sbjct: 88  DLKKLNKNKKLVKKL 102


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 395 ELKKDTKNKRLIKKL 439
           +LKK  KNK+L+KKL
Sbjct: 88  DLKKLNKNKKLVKKL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,029
Number of Sequences: 5004
Number of extensions: 37437
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)