Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    30   1.3  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   5.4  
10_08_0905 - 21469688-21469933,21470175-21470499,21470586-214708...    27   7.2  
03_05_1117 - 30526126-30526640,30527114-30527186,30527310-305278...    27   9.5  
02_03_0349 + 18010414-18014283                                         27   9.5  

>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 3   IMDGAINNDDQDQIVEQLLSEYDEIIMPLPAYASEPHLL 119
           I++   + D Q+ +VEQ + +YD  + P   Y   P LL
Sbjct: 99  IINHQFSEDPQNILVEQQIQQYDSALYPNGVYTPAPDLL 137


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 9   DGAINNDDQDQIVEQLL---SEYDEIIMPLPAYASEPHLLISRVRKSYMDYMVQLLKVNY 179
           DGAI  DDQ+++++ +L   S   ++  PL   ++   L +   + + +   + ++  N 
Sbjct: 398 DGAICLDDQERVIKTILFSMSILPDVCQPLLIVSTSASLSLWEAKFNRLAPSINVVVYNG 457

Query: 180 ETSHRIQHQKLHF 218
           E   R Q Q L F
Sbjct: 458 EKDVRKQIQDLEF 470


>10_08_0905 -
           21469688-21469933,21470175-21470499,21470586-21470833,
           21471061-21471315
          Length = 357

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 15  AINNDDQDQIVEQLLSEYDE--IIMPLPAYASEPHLLISRVRKSYMDYMVQLLKVNYETS 188
           A+ N ++++I   L     E  +I PLP +  +  +    +  SY+D+M Q+     +  
Sbjct: 290 AVINPNKERISAALFHYPSENMVISPLPEFVKDGKVKYRSI--SYLDFMKQIFTQQLDGK 347

Query: 189 HRIQHQKL 212
           +R++  KL
Sbjct: 348 NRVEVLKL 355


>03_05_1117 -
           30526126-30526640,30527114-30527186,30527310-30527848,
           30528215-30528332
          Length = 414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 87  LPAYASEPHLLISRVRKSYMDYMVQLLKVNYETSHRIQHQKLH 215
           LPAY +E    +S   +  +D+ ++ LK + E  +++  QKL+
Sbjct: 287 LPAYITEDQHTLSVRFEDSIDHALKELKRSQEAEYKLAEQKLY 329


>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 329 YYAHVPQIQYIFYKFVQSYIFVLLSFYVFSTSPNSTGKMEFLVLNSV 189
           Y  H+P +QY++   ++S   V  SFY     P+    ++ L + ++
Sbjct: 844 YLGHLPSLQYLYIVNMKSVECVDSSFYGSGEKPSGLQSLKVLEIENM 890


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,996,714
Number of Sequences: 37544
Number of extensions: 204304
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)