Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06)              28   5.6  
SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0)                      27   9.7  

>SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06)
          Length = 451

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 249 IE*KQHKNV*LYKFIENILDLWYMCIILTNKIVLII 356
           +E  +HKN+ LY FI  I+ +  + +++   I++II
Sbjct: 249 LEMSRHKNLSLYAFINIIITVIIIIVVIIITIIIII 284


>SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 VQQHLSIKCCTSMCL 520
           VQ HLS+  CTSMC+
Sbjct: 278 VQAHLSVGSCTSMCV 292


>SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 251

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 15  AINNDDQDQIVEQLLSEYDEI 77
           A+N   Q+QIVE LL EYDEI
Sbjct: 229 AMNMVYQNQIVEFLLLEYDEI 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,374,571
Number of Sequences: 59808
Number of extensions: 257739
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)