Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 329 YYAHVPQIQYIFYKFVQSYIFVLLSFYVFSTSPNSTGKMEFLVLNSVACFIVNF 168
           Y  H P I       V+SY+F +LS ++ S   +   + ++L L   A F + F
Sbjct: 297 YLVHWPVISIFLSATVKSYLFCILSIFIASIVLHHLFEKQYLKLEMRAVFPLVF 350


>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 284 VQSYIFVLLSFYVFSTSPNSTGKMEFLVLNSVACFI 177
           V + + +L   + FS       K+E  + NS ACFI
Sbjct: 59  VLTLLIILFDIFNFSFKGTLVCKLELFISNSAACFI 94


>U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical
           protein M01E11.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 21  NNDDQDQIVEQLLSEYDEIIMPLPAYASEPHLLISRVRKSYMDYMVQLL 167
           N DD  + +E  + E D+ I  + + AS+P L  S V  + ++ ++QLL
Sbjct: 85  NPDDAQKFMESEI-ELDKAIQEMHSLASQPDLYGSFVEVNGVEILLQLL 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,237
Number of Sequences: 27780
Number of extensions: 209049
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)