Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0163
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36670.1 68418.m04388 PHD finger family protein                     28   3.4  
At5g23030.1 68418.m02692 senescence-associated family protein si...    27   7.9  

>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 337  FVNIMHMYHRSNIFSINLYN-HTFLCCFHSMFLAHLQIALGKWSFWC 200
            F+   +MY R  +    +    +F+  F  MFLA  ++ L  W F C
Sbjct: 880  FIGTRYMYRRQGMCRRLMDGIESFVAYFSQMFLAISEVLLDVWQFCC 926


>At5g23030.1 68418.m02692 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 264

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 329 YYAHVPQIQYIFYKFVQSYIFVLLSFYVFSTSPNSTGK 216
           Y +H+    Y+F+ F+   + ++LS ++F  +  + GK
Sbjct: 66  YGSHIIITLYLFFLFLSILLLLVLSVFIFLVTNPTAGK 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,864
Number of Sequences: 28952
Number of extensions: 179654
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)