Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0162
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   115   5e-27
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.4  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    25   8.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  115 bits (277), Expect = 5e-27
 Identities = 55/90 (61%), Positives = 66/90 (73%)
 Frame = -2

Query: 525 IRFCILFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSIGAVFAIMGGFXN*YPLFT 346
           I F ILFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS+GA+F + G +    P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 345 GLSLNSYILKIQFFTIFIGVNITFFPQHFL 256
           GL  N  +  IQF+ +FIGVNI F PQHFL
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHFL 437



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 262 FFSLAGIPRRYSDYPD 215
           F  L G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 349 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFSL 251
           +RPF KFL  K  IF + YW +  +  T +  L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 355 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFSLAGIPRRYSDYP 218
           F YRP+I+    K +  +        + S TF++   + +R  +YP
Sbjct: 18  FYYRPWIRIENIKPTPLWKPITFAVGVGSATFYTANYLDKRRKNYP 63


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 492 LTGVILANSSIDITLHDTYYVV 427
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,851
Number of Sequences: 5004
Number of extensions: 31372
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)