Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0162
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 130 8e-31
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 6.6
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 130 bits (314), Expect = 8e-31
Identities = 61/90 (67%), Positives = 69/90 (76%)
Frame = -2
Query: 525 IRFCILFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSIGAVFAIMGGFXN*YPLFT 346
I F LFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS+GAVFAI GF + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 345 GLSLNSYILKIQFFTIFIGVNITFFPQHFL 256
G N KI F+ +FIGVNITFFPQHFL
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHFL 135
Score = 34.7 bits (76), Expect = 0.057
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Frame = -1
Query: 379 GGIYXLISFIYRPFIKFL-YTKNSIFYNI-YWSKYNIFSTTFF-----SLAGIPRRYSDY 221
G ++ + + Y F K Y N ++ I +W + + TFF LAG PRRYSD+
Sbjct: 88 GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 147
Query: 220 PDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLP 53
D + + + + N S S+E Q P
Sbjct: 148 ADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSP 207
Query: 52 PAEHSYNELPIL 17
PA H+YNELP +
Sbjct: 208 PALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = -2
Query: 402 IGAVFAIMGGFXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFL 256
+GAVFAI GF + TG N KI F+ +FIGVNITFFPQHFL
Sbjct: 1 MGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFL 49
Score = 34.7 bits (76), Expect = 0.057
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Frame = -1
Query: 379 GGIYXLISFIYRPFIKFL-YTKNSIFYNI-YWSKYNIFSTTFF-----SLAGIPRRYSDY 221
G ++ + + Y F K Y N ++ I +W + + TFF LAG PRRYSD+
Sbjct: 2 GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 61
Query: 220 PDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLP 53
D + + + + N S S+E Q P
Sbjct: 62 ADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSP 121
Query: 52 PAEHSYNELPIL 17
PA H+YNELP +
Sbjct: 122 PALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 86
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 85 PSS---IE*YQNLPPAEHSYNELPIL 17
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 86
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 85 PSS---IE*YQNLPPAEHSYNELPIL 17
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 86
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 85 PSS---IE*YQNLPPAEHSYNELPIL 17
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 86
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 85 PSS---IE*YQNLPPAEHSYNELPIL 17
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 86
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 85 PSS---IE*YQNLPPAEHSYNELPIL 17
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 262 FFSLAGIPRRYSDYPD 215
F LAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 398 EQYLQLWGDLXTDILYLQAFH*ILIY*KFNFLQY 297
+++ ++W T LYLQ FH +L+ K F Y
Sbjct: 53 KRFKKVWQLALTQTLYLQGFHRVLVCLKHFFASY 86
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 90 ISHHQLNDIKIYHQQNIHIMNYQF 19
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 361 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 272
+ FIY + FL +KN F+ YW+ YN F
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,978
Number of Sequences: 59808
Number of extensions: 187526
Number of successful extensions: 330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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