Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0161
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 147 7e-37
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 147 7e-37
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 147 7e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 84 9e-18
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 78 6e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 49 2e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.003
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.003
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.013
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.030
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.070
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 31 0.092
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.092
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 30 0.12
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.21
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.21
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 27 1.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 2.6
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 3.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 3.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 3.5
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 4.6
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 6.1
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 8.0
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 24 8.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.0
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 8.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 147 bits (356), Expect = 7e-37
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 101 bits (241), Expect = 6e-23
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 147 bits (356), Expect = 7e-37
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 101 bits (242), Expect = 4e-23
Identities = 45/51 (88%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEF
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEF 123
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 147 bits (356), Expect = 7e-37
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 101 bits (241), Expect = 6e-23
Identities = 44/51 (86%), Positives = 47/51 (92%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 83.8 bits (198), Expect = 9e-18
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 233
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 234 AERERG 251
ERE+G
Sbjct: 296 EEREKG 301
Score = 54.4 bits (125), Expect = 7e-09
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEF
Sbjct: 304 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF 354
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 77.8 bits (183), Expect = 6e-16
Identities = 33/67 (49%), Positives = 47/67 (70%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 233
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 234 AERERGI 254
ER RG+
Sbjct: 235 EERARGV 241
Score = 53.6 bits (123), Expect = 1e-08
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 409
+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + F
Sbjct: 243 MDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNF 293
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 49.2 bits (112), Expect = 2e-07
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 406
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 227
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 228 LKAERERGI 254
E+ RGI
Sbjct: 94 APEEKARGI 102
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.003
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 0.65
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.003
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 0.65
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.013
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 278 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.030
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 278 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
FE S Y + IID PGH DF + D AVL++ A +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181
Score = 31.9 bits (69), Expect = 0.040
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 246 RGI 254
+GI
Sbjct: 111 KGI 113
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.070
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 391
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 25.0 bits (52), Expect = 4.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 36 PKMGKEKTHINIVVIGHVDSGKST 107
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 30.7 bits (66), Expect = 0.092
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = -2
Query: 403 TGTSSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDW----IPRSRS 236
T ++ + +SL SC L + S + + S + SN IP+
Sbjct: 119 TSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGHGDIPIPKKNP 178
Query: 235 AFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 131
A S+ N++ + +D LP + S V+L +P H
Sbjct: 179 ARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.092
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 269 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 25.8 bits (54), Expect = 2.6
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 246 RGI 254
RGI
Sbjct: 104 RGI 106
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.12
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 30.3 bits (65), Expect = 0.12
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 246 RGI 254
RGI
Sbjct: 77 RGI 79
Score = 28.7 bits (61), Expect = 0.37
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
I+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 81 INSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.5 bits (63), Expect = 0.21
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
P+ +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 196 PLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.21
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIV 388
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 1.5
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -2
Query: 382 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDWIPRSRSAFSLSNTQAYL 203
EH+A+ L S +L IS R N GNI L S + + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 202 KDPLPI 185
K LPI
Sbjct: 62 KALLPI 67
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 249 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 151
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 257 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 343
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 3.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 316 SINDGNIVLASFELPESNIDWIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 137
S++ + L S+ P S + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 3.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 228 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 100
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 4.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 183 PGPPSRTSRWYVCQYHHIC 127
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 243 ERGIQSILLSGSSKLASTMLPSLML--LDTEISSRT 344
ER +QSI +SKL + LP+++L +D I S++
Sbjct: 8 ERMLQSIRSHKNSKLENQRLPAILLHSIDNYIDSKS 43
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 352 CDHVLDEISVSRSINDGNIVLASFEL 275
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 9 LHAFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
L AF +R+ + + + ++V+G SGK+T +Y+ G
Sbjct: 492 LPAFAVRE-QLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDG 533
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 346 HVLDEISVSRSINDGNIVLASFELPESNIDWIPRSRSAFS 227
+ +D+ SV R +N + + ELPE ++ R AFS
Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 69 IVVIGHVDSGKSTTTGHLIYKC 134
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 72 VVIGHVDSGKSTTTGHLIYKCG 137
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,602
Number of Sequences: 5004
Number of extensions: 31048
Number of successful extensions: 136
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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